PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142436.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 237aa    MW: 27966.1 Da    PI: 5.1331
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.4e-172175256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++ ++f++eq++ Le +Fe++  +  +++ +LA++l+L+ r V +WFqN+Ra++k
  XP_009142436.1 21 KNQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELSLQPRPVAIWFQNKRARWK 75
                    66789*************************************************9 PP
2HD-ZIP_I/II115.43.3e-3722113293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ++rr+s+eq+k+LE++Fe+e++Lep++Kv+lareL lqpr va+WFqn+RAR+k+kqlE++++ L+++y+ l+++ e+L+ke++ L +el++
  XP_009142436.1  22 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELSLQPRPVAIWFQNKRARWKSKQLETEFNILRQNYNDLASQFESLKKENQGLVSELDR 113
                     68************************************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-161376IPR009057Homeodomain-like
SuperFamilySSF466897.52E-161579IPR009057Homeodomain-like
PROSITE profilePS5007116.731777IPR001356Homeobox domain
SMARTSM003891.3E-122081IPR001356Homeobox domain
PfamPF000461.1E-142175IPR001356Homeobox domain
CDDcd000864.38E-122178No hitNo description
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
Gene3DG3DSA:1.20.5.503.6E-477146No hitNo description
PfamPF021833.5E-1477117IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MMSADPFMTM KKIKKSSHNE KNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELSLQP  60
RPVAIWFQNK RARWKSKQLE TEFNILRQNY NDLASQFESL KKENQGLVSE LDRLNEAIQT  120
KQDEGRECCG DQTVVALSST DHESEKEENT KPEPEEVRPE MEVYEKGHHD DYGYNSHIKR  180
EYFGGFEEEA DHLMNIVEPA DSCLTSSVDW RGFKTNTNIL DQSSSNYPWW HFWSSTI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.198201e-115bud| flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142436.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528710.0AK352871.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-L20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142436.11e-179PREDICTED: homeobox-leucine zipper protein ATHB-7
SwissprotP468971e-131ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A397ZQD81e-176A0A397ZQD8_BRACM; Uncharacterized protein
STRINGBo4g197260.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-119homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]