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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009142446.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family | GRAS | ||||||||
| Protein Properties | Length: 487aa MW: 54231.4 Da PI: 4.7857 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 329 | 9e-101 | 122 | 486 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
ve L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++s + + l+++++ ++++ a+k fs +sPi+ fsh
XP_009142446.1 122 VEDLIRVVDCVESDELQLAQVILSRLNQRlRSPAGRPLQRAAFYFKEALGSLLTGSNRNQTRLLSSWTE----IVQKIRAVKEFSGISPIPLFSH 212
688*************************99*************************55555554444444....8********************* PP
GRAS 96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
+taNqaIl++++++ vH++Dfd++ G+Q+++L++++a+++ ++ lR+T+v+++e + e++ ++e+L++fA+e++++f+++++++k++
XP_009142446.1 213 FTANQAILDSLNSQtsssPFVHVVDFDVGFGGQYASLMREIAEKSISSGFLRVTAVVAEE--CAVETRLVKENLTQFAAEMKIRFQIEFVLMKTF 305
***********9987777899*************************************66..9******************************** PP
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpre 278
e+l+++++r+ gE ++V ++ +++r l s + e++ ++++sPkvvv+v++e ++ +++sF ++f+ ale+y+++++sl+a +p+
XP_009142446.1 306 EMLSFKAIRFVDGERTVVLISPAIFRRL-------SGIAEFVTNLRRVSPKVVVFVDSEgwTEIaGAGSFRREFVTALEFYTMVLESLDAAAPPG 393
***************************9.......44567*******************766668999*************************** PP
GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+ ++ vE+++l+++iv +v ++g++ r+ ++Wre++ aG+++++ls++a qa++ll+k +++g++v +++++lvl+W++r+Lv++SaW
XP_009142446.1 394 DLVKKIVEAFVLRPKIVAAVETAGDR---RNVGEMTWREAFCGAGMRSIQLSQFAIFQAECLLEKAQVRGFHVAKRQEELVLCWHGRALVATSAW 485
*************************9...89999************************************************************* PP
GRAS 374 r 374
r
XP_009142446.1 486 R 486
8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 41.388 | 95 | 466 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 3.1E-98 | 122 | 486 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0030154 | Biological Process | cell differentiation | ||||
| GO:0048831 | Biological Process | regulation of shoot system development | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 487 aa Download sequence Send to blast |
MKVQASSPQD NQPSNTNSTD NNNNNNQLPS MDEHVMRSMD WDSIMKELEL DDDSTPNPLK 60 TEFTTTDSAI GPLYAVDSNL PGFPDQIQPS DFDSSDAYQN QTTGYGFTSL DSVDNGGGFD 120 FVEDLIRVVD CVESDELQLA QVILSRLNQR LRSPAGRPLQ RAAFYFKEAL GSLLTGSNRN 180 QTRLLSSWTE IVQKIRAVKE FSGISPIPLF SHFTANQAIL DSLNSQTSSS PFVHVVDFDV 240 GFGGQYASLM REIAEKSISS GFLRVTAVVA EECAVETRLV KENLTQFAAE MKIRFQIEFV 300 LMKTFEMLSF KAIRFVDGER TVVLISPAIF RRLSGIAEFV TNLRRVSPKV VVFVDSEGWT 360 EIAGAGSFRR EFVTALEFYT MVLESLDAAA PPGDLVKKIV EAFVLRPKIV AAVETAGDRR 420 NVGEMTWREA FCGAGMRSIQ LSQFAIFQAE CLLEKAQVRG FHVAKRQEEL VLCWHGRALV 480 ATSAWRF |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 5e-29 | 127 | 485 | 25 | 378 | Protein SCARECROW |
| 5b3h_A | 5e-29 | 127 | 485 | 24 | 377 | Protein SCARECROW |
| 5b3h_D | 5e-29 | 127 | 485 | 24 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_009142446.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009142446.1 | 0.0 | PREDICTED: scarecrow-like protein 15 | ||||
| Refseq | XP_013739179.1 | 0.0 | scarecrow-like protein 15 | ||||
| Swissprot | O23210 | 0.0 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
| TrEMBL | A0A3P5Z149 | 0.0 | A0A3P5Z149_BRACM; Uncharacterized protein | ||||
| TrEMBL | M4D5E3 | 0.0 | M4D5E3_BRARP; Uncharacterized protein | ||||
| STRING | Bra011700.1-P | 0.0 | (Brassica rapa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4291 | 28 | 57 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36710.1 | 0.0 | GRAS family protein | ||||
| Publications ? help Back to Top | |||
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