PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142446.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 487aa    MW: 54231.4 Da    PI: 4.7857
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3299e-1011224862374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ve L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++s  +  + l+++++     ++++ a+k fs +sPi+ fsh
  XP_009142446.1 122 VEDLIRVVDCVESDELQLAQVILSRLNQRlRSPAGRPLQRAAFYFKEALGSLLTGSNRNQTRLLSSWTE----IVQKIRAVKEFSGISPIPLFSH 212
                     688*************************99*************************55555554444444....8********************* PP

            GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqaIl++++++      vH++Dfd++ G+Q+++L++++a+++ ++  lR+T+v+++e   + e++ ++e+L++fA+e++++f+++++++k++
  XP_009142446.1 213 FTANQAILDSLNSQtsssPFVHVVDFDVGFGGQYASLMREIAEKSISSGFLRVTAVVAEE--CAVETRLVKENLTQFAAEMKIRFQIEFVLMKTF 305
                     ***********9987777899*************************************66..9******************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpre 278
                     e+l+++++r+  gE ++V ++ +++r l       s + e++  ++++sPkvvv+v++e  ++  +++sF ++f+ ale+y+++++sl+a +p+ 
  XP_009142446.1 306 EMLSFKAIRFVDGERTVVLISPAIFRRL-------SGIAEFVTNLRRVSPKVVVFVDSEgwTEIaGAGSFRREFVTALEFYTMVLESLDAAAPPG 393
                     ***************************9.......44567*******************766668999*************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +  ++ vE+++l+++iv +v ++g++   r+   ++Wre++  aG+++++ls++a  qa++ll+k +++g++v +++++lvl+W++r+Lv++SaW
  XP_009142446.1 394 DLVKKIVEAFVLRPKIVAAVETAGDR---RNVGEMTWREAFCGAGMRSIQLSQFAIFQAECLLEKAQVRGFHVAKRQEELVLCWHGRALVATSAW 485
                     *************************9...89999************************************************************* PP

            GRAS 374 r 374
                     r
  XP_009142446.1 486 R 486
                     8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.38895466IPR005202Transcription factor GRAS
PfamPF035143.1E-98122486IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MKVQASSPQD NQPSNTNSTD NNNNNNQLPS MDEHVMRSMD WDSIMKELEL DDDSTPNPLK  60
TEFTTTDSAI GPLYAVDSNL PGFPDQIQPS DFDSSDAYQN QTTGYGFTSL DSVDNGGGFD  120
FVEDLIRVVD CVESDELQLA QVILSRLNQR LRSPAGRPLQ RAAFYFKEAL GSLLTGSNRN  180
QTRLLSSWTE IVQKIRAVKE FSGISPIPLF SHFTANQAIL DSLNSQTSSS PFVHVVDFDV  240
GFGGQYASLM REIAEKSISS GFLRVTAVVA EECAVETRLV KENLTQFAAE MKIRFQIEFV  300
LMKTFEMLSF KAIRFVDGER TVVLISPAIF RRLSGIAEFV TNLRRVSPKV VVFVDSEGWT  360
EIAGAGSFRR EFVTALEFYT MVLESLDAAA PPGDLVKKIV EAFVLRPKIV AAVETAGDRR  420
NVGEMTWREA FCGAGMRSIQ LSQFAIFQAE CLLEKAQVRG FHVAKRQEEL VLCWHGRALV  480
ATSAWRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-2912748525378Protein SCARECROW
5b3h_A5e-2912748524377Protein SCARECROW
5b3h_D5e-2912748524377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142446.10.0PREDICTED: scarecrow-like protein 15
RefseqXP_013739179.10.0scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A3P5Z1490.0A0A3P5Z149_BRACM; Uncharacterized protein
TrEMBLM4D5E30.0M4D5E3_BRARP; Uncharacterized protein
STRINGBra011700.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]