PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142596.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 315aa    MW: 36207.2 Da    PI: 8.87
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142596.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.5e-12155205154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r++h  +Er+RR+++N  ++ Lr+l+P++   +  + + a+i+  A++++k L
  XP_009142596.1 155 QRMTHITVERNRRRQMNVYLSSLRSLIPSS---YILRGDQASIVGGAIDFVKLL 205
                     79****************************...9****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-15146215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-12153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-10153210No hitNo description
PROSITE profilePS5088814.303154205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-9155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-8160211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEEKIQGQNK LSVSVSSLDQ KVIVRRSLQV QGSSEDQRFV LEEDMMQQSE DLSSVLSVKD  60
PNFLRLLSLQ TLQKPWELGD YLPHEVPEFH SPTNYYHQNP SLERVNEAIS SQELQLNPLR  120
KRRNNNNLVA ASVSREKRKR KRTKPTKNTE EMESQRMTHI TVERNRRRQM NVYLSSLRSL  180
IPSSYILRGD QASIVGGAID FVKLLEQQLQ SLEAQKVTQQ TDTKDISLEQ SSKLRIDATV  240
IESHVNLKIQ CPKKQGQLLR SIIWLEKLRF TVLHLNVTSP CNATVSYSFN LKMEEDCTLT  300
SADEITAAVR QILDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120141KRRNNNNLVAASVSREKRKRKR
2137144RKRKRTKP
3155166RMTHITVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142596.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142596.10.0PREDICTED: transcription factor bHLH70 isoform X1
SwissprotO810371e-141BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A397Z5W80.0A0A397Z5W8_BRACM; Uncharacterized protein
STRINGBo4g006950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-122bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]