PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142677.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 313aa    MW: 33597.9 Da    PI: 5.9314
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142677.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.21e-24218280163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr++rkq+NRe+ArrsR+RK+ae+e+L+++v++L++eN++L++el++l+ e++klk+++
  XP_009142677.1 218 ERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLTSENQSLRDELQRLSGECEKLKTQN 280
                     89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.7E-29491IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1709.4E-22215281No hitNo description
PfamPF001701.5E-22218280IPR004827Basic-leucine zipper domain
SMARTSM003384.4E-23218282IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.633220283IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-12221278No hitNo description
CDDcd147024.34E-24223273No hitNo description
PROSITE patternPS000360225240IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGTSEEKTPS KPASSTQDIP PTPYPDWSNS MQAYYGGGGT PNPFFPSPVG SPSPHPYMWG  60
AQHHMMPPYG TPVPYPAMYP PGAVYAHPGM PMPPASAPTN KETVKEQAPG KKSKGSLKRK  120
GEGGEKAPSG SGNDGVSHSD ESVTGGSSDE NDENPNHQEQ GSVGKPSFGQ MLADASSQSN  180
TTGEIQGSVP MKPLAPGTNL NMGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR  240
KQAECEQLQQ RVESLTSENQ SLRDELQRLS GECEKLKTQN SSIQDELVRV HGPEAVANLE  300
QNDAGSKDGE GTD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234240RRSRLRK
2234241RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.108320.0flower| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142677.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX839220.0X83922.1 B.napus mRNA for G-Box binding factor 1A.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142677.10.0PREDICTED: G-box-binding factor 1
RefseqXP_013739255.10.0G-box-binding factor 1
RefseqXP_022575309.10.0G-box-binding factor 1
SwissprotP427740.0GBF1_ARATH; G-box-binding factor 1
TrEMBLM4D5E40.0M4D5E4_BRARP; Uncharacterized protein
STRINGBra011701.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-172G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]