PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142721.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 281aa    MW: 31565.9 Da    PI: 9.5999
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1506.3e-16212259654
                     HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                      +++++kNRe+A rsR+RK+ ++ eLe kv +Le+eNk+L+ +l+e +k
  XP_009142721.1 212 MQKKMIKNRESAARSRARKQVYTHELEIKVSSLEEENKKLR-RLKEVEK 259
                     58**************************************9.8887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-13204253No hitNo description
SMARTSM003389.1E-8206263IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.22209253IPR004827Basic-leucine zipper domain
CDDcd147071.88E-19211256No hitNo description
SuperFamilySSF579592.19E-9211253No hitNo description
PfamPF001705.5E-12212253IPR004827Basic-leucine zipper domain
PROSITE patternPS000360214229IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGSLRGNAEE PISQSLPRQN SLYSLKLHEV QNHLGSSAKP LGSMNLDELL KSVWSAEATN  60
QPPEATEAGL PRQGSLALPR GLSKKTVEEV WRDIQHDKNG SSGNPHGERI DSNNNKRPTL  120
GEITLEDLLL KAGVVTETVL PQNVVNVASN EPWIQYHHPQ HQQQGFMPYP VCEMQEMVSP  180
MNMMMGDAPQ AHGRKRVAPS GGDIVERVVE RMQKKMIKNR ESAARSRARK QVYTHELEIK  240
VSSLEEENKK LRRLKEVEKI LPSEPPPDPK WKLRRTSSAS F
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142721.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142721.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3
SwissprotQ9C5Q21e-136AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLA0A397Z5V60.0A0A397Z5V6_BRACM; Uncharacterized protein
TrEMBLM4CK630.0M4CK63_BRARP; Uncharacterized protein
STRINGBra004597.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18842883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.31e-124bZIP family protein
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  3. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]