PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009142816.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 326aa MW: 36637.8 Da PI: 7.0694

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009142816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.5e-12	258	303	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +Av+YIk+Lq XP_009142816.1 258 SIAERVRRTKISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 303 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.913	252	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-15	255	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.52E-11	256	305	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	257	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-12	258	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	258	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDSNTQNHLY DPNQVSSSSG SGLLRFRSAP SSVLAAFVDD NDKTVLNSNE FENKSRVSYA 60 AAPPPQQEPS SFLGLPPHYP KQSNGVMMMN TIGLDQFLSM NHHHHTRQAE SHLLRQSSSP 120 AGTFTNLSDQ NGYCYVGEEE EEEESPSHPN GLRRHSSLSS RPPSSLGMLS QIPEIDSESV 180 QYSHWNHPST SFIDNLSSLK RETEDDGKLF HGAQIMSHHL SLPKSASDMG SVDKYLQLQD 240 SVPCKVRAKR GCATHPRSIA ERVRRTKISE RMRKLQELVP NMDKQTNTSD MLDLAVDYIK 300 DLQRQYKILN ENRANCKCVN KEKNLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009142816.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC155337	0.0	AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence.
GenBank	AC189220	0.0	AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009142816.1	0.0	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	1e-159	BH130_ARATH; Transcription factor bHLH130
TrEMBL	M4CKE3	0.0	M4CKE3_BRARP; Uncharacterized protein
STRING	Bra004678.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6293	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-139	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]