PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009142817.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 308aa MW: 34452.7 Da PI: 6.5158

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009142817.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.7e-09	176	223	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq XP_009142817.1 176 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 223 79**********************9....889**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-15	170	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.59E-9	170	227	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.4E-15	172	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.634	172	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	176	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-8	178	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MNHLNQMFGV SSGAGPYRES PMTGLESLNF IDEIQQLAAT FPPENTGSFT ALLEMPATQA 60 VELFTSSSQA AGNIAPPTLH PFRRLTFPPD LAAVIAAEQN GNISGESSSF GIRVKSEPEE 120 TDSSQRFVSN QNHNKRKERG KKKVKSSMKK TKISDEEAEK LPYVHVRARR GQATDNHSLA 180 ERARREKINA RMKLLQELVP GCDKIQGTAL VLDEIINHVQ SLQHQVEMLS MRLAAVNPRI 240 DFNLDSLLAS QNSFLMDGSF NGEFYHQLQQ WPLDGYHQPE WGREEDHHEA SFLMGSATLH 300 SNQVKMEL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009142817.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC155337	0.0	AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence.
GenBank	AC189220	0.0	AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009142817.1	0.0	PREDICTED: transcription factor bHLH48 isoform X1
Swissprot	Q8VZ02	1e-137	BH048_ARATH; Transcription factor bHLH48
TrEMBL	M4CKE4	0.0	M4CKE4_BRARP; Uncharacterized protein
STRING	Bra004679.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	1e-138	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]