PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142818.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 256aa    MW: 28354.1 Da    PI: 8.5045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.3e-09176223455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  XP_009142818.1 176 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 223
                     79************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.42E-16170241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-9170227No hitNo description
PROSITE profilePS5088814.634172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-15172240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6176223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-8178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNHLNQMFGV SSGAGPYRES PMTGLESLNF IDEIQQLAAT FPPENTGSFT ALLEMPATQA  60
VELFTSSSQA AGNIAPPTLH PFRRLTFPPD LAAVIAAEQN GNISGESSSF GIRVKSEPEE  120
TDSSQRFVSN QNHNKRKERG KKKVKSSMKK TKISDEEAEK LPYVHVRARR GQATDNHSLA  180
ERARREKINA RMKLLQELVP GCDKIQGTAL VLDEIINHVQ SLQHQVEMLS MRLAAVNPRI  240
DFNLDSLLAS QFSNGW
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142818.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553370.0AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence.
GenBankAC1892200.0AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142818.10.0PREDICTED: transcription factor bHLH48 isoform X2
SwissprotQ8VZ022e-95BH048_ARATH; Transcription factor bHLH48
TrEMBLM4CKE41e-178M4CKE4_BRARP; Uncharacterized protein
STRINGBra004679.1-P1e-179(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.12e-96bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]