PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143023.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 579aa    MW: 64525.4 Da    PI: 9.4268
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.7e-103889347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47
                     +W t E++ll++avk++G  +W+++a+++          +++ +c+++++++
   XP_009143023.1 38 AWGTCEELLLACAVKRHGFCDWDSVAAEVRtrtslssVFLSADDCRHKYRDL 89
                     799***************************9888888888999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-43389IPR009057Homeodomain-like
SMARTSM007178.5E-53592IPR001005SANT/Myb domain
SuperFamilySSF466892.29E-53692IPR009057Homeodomain-like
PfamPF002492.4E-93889IPR001005SANT/Myb domain
CDDcd001675.35E-64389No hitNo description
SuperFamilySSF473703.27E-17249363IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.9E-17251363IPR001487Bromodomain
SMARTSM002974.0E-20256365IPR001487Bromodomain
CDDcd043695.19E-15267360No hitNo description
PfamPF004393.6E-11269349IPR001487Bromodomain
PROSITE profilePS5001412.678275346IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.9E-17414439IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MTKEEEASYS MNDICSNDHN IDDNNNNNTN LKQHEGRAWG TCEELLLACA VKRHGFCDWD  60
SVAAEVRTRT SLSSVFLSAD DCRHKYRDLQ RRFKESADGD NDATAEEEGG NDIPWLEELR  120
SLRVAELRRE VEQYDVSILS LQLKVKKLEE ERDGGEKLDL VEEGERKGER SENDGGEKAE  180
ESEREKRSMN ESNSTGSGEK TVGEDEPGQT RGDDVDPDPV NAAEEGSGAS DSGELGESGT  240
SGRKWKRKRR KDSDGEIRSA ASESQPLIRL LDLIRSHPRG SLFERRVRSQ ESKDYKSLVK  300
QHLDIETIQR KLTQGSYDSS KLTFYRDLQL LFANVIVFFP SSSSESMAAH ELRAIVSEEM  360
RKESGKSSPR LLKASAGMSS IKAEAAETSE QKSSAPLVVC KRRRFVSAKA KASPSSSSFS  420
QKEETKEETV SEENENVETG GRSSKRTANS TKTGKGKNKQ KQAEEEAKTE KKVVVSSDKK  480
KSVADFLKRI KKSSPQKEDK DQNKSKKESK PKPRELRSNN VGKKKKAEVE NAATPVKRAP  540
GRPPQKKTVE AVATASGKRG RESGSTGKDN KQPKKRSRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242250RKWKRKRRK
2242251RKWKRKRRKD
3245250KRKRRK
4246251RKRRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143023.10.0PREDICTED: serine/threonine-protein kinase PRP4 homolog
TrEMBLM4CKU50.0M4CKU5_BRARP; Uncharacterized protein
STRINGBra004831.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-153DNA-binding bromodomain-containing protein