PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143138.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 188aa    MW: 20738.6 Da    PI: 6.7714
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.88.9e-39151151100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf aeq +++fa+vhk+FGasn +k+l +lp ++r++a+s+l+yeA ar+rdPvyG+vg++l+lq+q+++l+ae+
  XP_009143138.1  15 PCGACKFLRRKCVSGCVFAPYFDAEQgTATFAAVHKVFGASNASKMLLRLPLNKRHEAVSTLCYEALARLRDPVYGSVGHLLSLQHQVMNLQAEI 109
                     7***********************9988******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_009143138.1 110 AHVQAR 115
                     *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.20614116IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-3815113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MTGNLNGGGR GGEGPCGACK FLRRKCVSGC VFAPYFDAEQ GTATFAAVHK VFGASNASKM  60
LLRLPLNKRH EAVSTLCYEA LARLRDPVYG SVGHLLSLQH QVMNLQAEIA HVQARLSAFQ  120
RVSIIPPQQM QQPPHNNEYP VEQTNLDFVW EEEQLPQAGN EDGEFQELAM QFVSKYLTEV  180
KLPACTFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-34111137110LOB family transfactor Ramosa2.1
5ly0_B1e-34111137110LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143138.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894981e-170AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143138.11e-139PREDICTED: LOB domain-containing protein 19-like
RefseqXP_013752185.11e-139LOB domain-containing protein 19
SwissprotO221326e-92LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A291LR701e-138A0A291LR70_BRARR; Transcription factor LBD19
TrEMBLA0A397ZDV01e-138A0A397ZDV0_BRACM; Uncharacterized protein
TrEMBLM4CL221e-138M4CL22_BRARP; Uncharacterized protein
STRINGBra004908.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.16e-90LOB domain-containing protein 19