PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143160.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 324aa    MW: 34510.1 Da    PI: 10.1796
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.34.7e-3758145290
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsss 87 
                     + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++         +           ++
  XP_009143160.1  58 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsvngtlkipT--------T--TN 142
                     57999***********************************************************888884442111111111........1..11 PP

             TCP  88 gka 90 
                     +++
  XP_009143160.1 143 ADS 145
                     111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3063143IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32764118IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MATIKHHEDE RLRAVDLTSK PFEVNNAVSL EPKTEPSLES SLQVPSTSMS LAPPSRPPLK  60
RASTKDRHTK VEGRGRRIRM PATCAARIFQ LTRELGHKSD GETIRWLLEN AEPAIIAATG  120
TGTVPAIAMS VNGTLKIPTT TNADSDVGDN SAKKRRKRPS NSEYIDINEA VTVSVSSGLA  180
PISGLSPISS GLAPVSTVSQ QTLPQGMIPM WAIPSNAVIP TVGAFFLVPH VSGPTNQPQM  240
LAFPAAPPSS YVAAVQQASL MARPPFVSVS TPSVMAPSSS SGVTNRGSSS STTNMLRDFS  300
LEIYEKQELH QFMSTTTARS SSNH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152156KKRRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895801e-131AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143160.10.0PREDICTED: transcription factor TCP9
RefseqXP_013748133.10.0transcription factor TCP9-like
RefseqXP_022561503.10.0transcription factor TCP9-like
SwissprotO646471e-144TCP9_ARATH; Transcription factor TCP9
TrEMBLM4CL430.0M4CL43_BRARP; Uncharacterized protein
STRINGBra004929.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-139TCP family protein