PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143168.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 754aa    MW: 83029.2 Da    PI: 7.0879
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.5e-2172127156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r +L+++l+L++rqVk+WFqNrR+++k
  XP_009143168.1  72 KKRYHRHTPHQIQELESVFKECPHPDEKQRLDLSRRLNLDTRQVKFWFQNRRTQMK 127
                     688999***********************************************999 PP
2START186.31.6e-582775023206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a  a++elvk+a+ +ep+W +ss    e++n++e+ ++f +  +     + +ea++++g+v+ ++  lve+l+d+  +W e+++    k +t+e 
  XP_009143168.1 277 AVFAMDELVKMAQTSEPLWIQSSkgkrEMLNREEYDKSFRPCLGpkpggFVSEASKEVGMVIINSLALVETLMDSE-RWAEMFPcmiaKNSTIEI 370
                     66689******************999999999999999977555999999**************************.****************** PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                     issg      ga+qlm+aelq+lsplvp R ++f+R+++q+ +g+w++vdvSvd  +++       s+  +++lpSg+l+++++ng+skvtw++h
  XP_009143168.1 371 ISSGmggtrnGAIQLMQAELQLLSPLVPvRQVTFLRFCKQHAEGVWAVVDVSVDRVSDRGGsasARSSLSCRRLPSGCLVHDMPNGYSKVTWIDH 465
                     *********************************************************9987666778888************************* PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++  +h  +r+lv+sgla+g k+wv++lqrqce+
  XP_009143168.1 466 TEYDETNIHHSYRPLVSSGLAFGSKRWVSALQRQCES 502
                     ***********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-2157129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-2160129IPR009057Homeodomain-like
PROSITE profilePS5007117.57269129IPR001356Homeobox domain
SMARTSM003891.5E-2070133IPR001356Homeobox domain
CDDcd000863.22E-1972129No hitNo description
PfamPF000465.8E-1972127IPR001356Homeobox domain
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
PROSITE profilePS5084842.76266505IPR002913START domain
SuperFamilySSF559612.47E-28269503No hitNo description
CDDcd088756.51E-107270501No hitNo description
SMARTSM002341.8E-48275502IPR002913START domain
PfamPF018521.2E-50278502IPR002913START domain
SuperFamilySSF559612.47E-21532746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MSGGPVQFSS PRLSLGLQTN VENNGGEVGR TGESFEVSVT RRSPESRSGS DNVEALSGED  60
DLDASDRPLK KKKRYHRHTP HQIQELESVF KECPHPDEKQ RLDLSRRLNL DTRQVKFWFQ  120
NRRTQMKTQI ERHENSLLRQ ENDKLRAENM SVREAMRNPM CGHCGASAVL GEISLEEHQL  180
RIENSRLKDE LDRLCALAGK FINRSDDAGS HQLPNSTLKL GVGSRNVDAG GGFTLLHPAF  240
EISSSHFYSG LSAPVNRTGT DIASGGVDEK SFYLELAVFA MDELVKMAQT SEPLWIQSSK  300
GKREMLNREE YDKSFRPCLG PKPGGFVSEA SKEVGMVIIN SLALVETLMD SERWAEMFPC  360
MIAKNSTIEI ISSGMGGTRN GAIQLMQAEL QLLSPLVPVR QVTFLRFCKQ HAEGVWAVVD  420
VSVDRVSDRG GSASARSSLS CRRLPSGCLV HDMPNGYSKV TWIDHTEYDE TNIHHSYRPL  480
VSSGLAFGSK RWVSALQRQC ESLAILMSSA IPNRSKPTPA ISSIGKKSML RLAQRMTENF  540
CRGVCASSSQ KWSKLDIGNI DEDVRIMTRK NVNDSGEPPG ILLSAATSVW VPVTPRRLFD  600
FLRDELLRSE WDILSNGGPM QEIANIFKGQ DHSNSVSLLR STAMNASQSS MLILQETSID  660
ASGAVVVYAP VDIPAMHSVM NGGDSAYVAL LPSGFAILPD GQGTEETGSL LTVAFQILVN  720
SLPTAKLNVE SIETVSNLIS CTVQKIRAAL RCEK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143168.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143168.10.0PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X3
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLM4CL480.0M4CL48_BRARP; Uncharacterized protein
STRINGBra004934.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]