PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143234.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 426aa    MW: 46965.3 Da    PI: 9.7964
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143234.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00062192214223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C++Cg+ Fs+ +  + H  t H
  XP_009143234.1 192 SCHKCGEKFSNLEAAEAHHLTkH 214
                     6*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280193214IPR007087Zinc finger, C2H2
SuperFamilySSF563993.17E-24216425No hitNo description
Gene3DG3DSA:3.90.228.101.9E-11217422IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEGSRKRSEK KKKHQLEREN TNTQKNKKLP SVWFSLKKSL HCKSDPTDVH DPSSRSKETT  60
KRSTYRSGCS RSIANLKDVI HGSNRHLEKP TTCSSPRSIG SSEFLNPITH EVIISNSTSE  120
LKITAAAGDK DSPAGAREFV GTLRPGTPVH YSSSHINQAS RKASSERDRG GAAFKQSRRD  180
SAVVNGDDSS VSCHKCGEKF SNLEAAEAHH LTKHAVTELV EGDSSRKIVE MICRTSWLKT  240
ENQCGRIDRI LKVHNMQKTL ARFEEYRDTV KNRASKLQKK HPRCIADGNE LLRFHGTTVS  300
CVLGVNGCTS LCSSEKCCVC RIIRNGFSVK REMNNGIGVF TASTSGRAFE SIAMDGGDGT  360
TERKALIVCR VIAGRVHRPV ENVEEMGGLN GFDSLAGKVG LYTNVEELYL LNSRALLPCF  420
VVICKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512KRSEKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143234.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143234.10.0PREDICTED: uncharacterized protein LOC103866964
RefseqXP_013742841.10.0uncharacterized protein LOC106445758 isoform X1
TrEMBLA0A398APW10.0A0A398APW1_BRACM; Uncharacterized protein
TrEMBLM4EC570.0M4EC57_BRARP; Uncharacterized protein
STRINGBra026366.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3553812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.10.0C2H2 family protein