 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009143303.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
GATA |
| Protein Properties |
Length: 223aa MW: 24516.5 Da PI: 6.9406 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009143303.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 64.5 | 1.2e-20 | 83 | 117 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
XP_009143303.1 83 CANCDTTSTPLWRNGPSGPKSLCNACGIRFKKEER 117
********************************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MGLSMFFSSE NDVIHHHSSP YASVDCTLSL GTPSTRLCND DDDRRFSTHT SNNISNALGS 60
WDFSHGGKKA GEGGGNNLVA RRCANCDTTS TPLWRNGPSG PKSLCNACGI RFKKEERRAS 120
AAGNSTSGGG LTAFGVPASD HHGGADYYYN NNSNNNHYYA SSSPWTHHQQ QNTQRVPYYS 180
PANNNEYSFV DDVRESHDIT TDPFLSWRLN VADRTRLVHD CTM
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed throughout the inflorescence meristem (IM) and early stages of floral primordia. In developping flowers, restricted to the innert hree whorls, speci fi cally in the petals, stamens, and carpels. Within the stamens, mostly detected in the anther locules as well as in the vascular strands. In carpels, mainly present in ovules. {ECO:0000269|PubMed:23335616}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189373 | 0.0 | AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence. |
