PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143395.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 247aa    MW: 28146 Da    PI: 4.952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-1973128155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr++  +g+WvAeIr+p++ +g  +kr +lg+f+ta +Aa a+++a+ +++g
  XP_009143395.1  73 CRFRGVRQRV-WGKWVAEIREPVNqRGgNSKRLWLGTFDTAADAALAYDRAASAMYG 128
                     689*****99.**********888777677**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1373128IPR001471AP2/ERF domain
CDDcd000185.67E-2773137No hitNo description
PROSITE profilePS5103221.90474136IPR001471AP2/ERF domain
SMARTSM003806.9E-3274142IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2074137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-2874137IPR001471AP2/ERF domain
PRINTSPR003671.7E-97586IPR001471AP2/ERF domain
PRINTSPR003671.7E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEKEDNGPNQ SSSASIEPSR RRRRAAEPVD TTLSRWVKEE EEEEGLKRTR RVQAKGSRKG  60
CMRGKGGPEN PVCRFRGVRQ RVWGKWVAEI REPVNQRGGN SKRLWLGTFD TAADAALAYD  120
RAASAMYGRY ARLNFPDGLG NGQDDEMKKT DEAESSRSYW LETCNVSETG NSVVVDKKDG  180
EDYLYEDCIE LGQDKIEKLG RMADNEIVKS EEDYMFDGFE LDNGLLYNES GHYHGGGFEP  240
YLEHFRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1875143670ATERF1
3gcc_A6e-1875143670ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in xylem tissues, stigma, anthers and region where sepals and petals attach the peduncle. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00298DAPTransfer from AT2G38340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143395.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143395.10.0PREDICTED: dehydration-responsive element-binding protein 2E
SwissprotO809172e-90DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBLA0A397Z7X50.0A0A397Z7X5_BRACM; Uncharacterized protein
TrEMBLM4CLM60.0M4CLM6_BRARP; Uncharacterized protein
STRINGBra005113.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.19e-81ERF family protein
Publications ? help Back to Top
  1. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]