PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143542.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 721aa    MW: 79269.5 Da    PI: 6.7572
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143542.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-0858100347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
   XP_009143542.1  58 AWTHQEEESFFTALRQVGKN-FAKITSRVQ-SKNKDQVRHYYYRL 100
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1150105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-553103IPR009057Homeodomain-like
PROSITE profilePS5129313.17554105IPR017884SANT domain
SMARTSM007174.6E-655103IPR001005SANT/Myb domain
CDDcd001671.55E-558101No hitNo description
PfamPF002491.9E-658100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MLERSCAMQG EKEVTLSSQG SVEEGREPNQ NSNPNIASSA SIAVPQFPAK KPTRQWAAWT  60
HQEEESFFTA LRQVGKNFAK ITSRVQSKNK DQVRHYYYRL VRRMNKLLGP ELSLDAKNPK  120
DTNAAMLRWW SLLEKYSCKA SKLHLKPRRF KLFLEALEHQ LLKDRRKSSR KRACHGESFS  180
SASLGNISSH SRERGLDNSP FKLILCDSQN VRPGRASTKH GESLGVRLGD EKEDTALGRV  240
GRQRRKQAGY RKWEKAAIDG VSLVADAAEH LERTSIDKDV NGQKDLGPTR YLTGKSPLSL  300
PSSGEAPLSD ANMQFSAKLK LQLFPIDEST RRSLEADKHN PHLELTLSNR KKISSVLEHL  360
NRKWGSSSCA CGELMLFPYN ARKETVALHQ RWTSDSFLSA VEVYSMVGSP SLFRLRYGWF  420
VQDASGSFIS QVPTSASYPS LEDNMNVDAA NEDNMLLTES GPLSNKHPTS EPETSVVCTA  480
AETRANYEPA SATITPFDHL SSGNTLSAGA WADSLTNISI GDLLSEAPDC VDPPAAEGSH  540
CLLRDVSFAS DSFDAAIAAH ILRHQNKPSG GLIPVTSGSS SLWDDEDTRD AFSFQKTRRA  600
NLSKFADVAS NGEPSQLVEA TSGDEGPCNL PDQQGDPMEE GPADPPTMDS PGKTIYGLAD  660
VYWPDSLGPL DLDIRSSKYA EDLNLSDSLG GLSRLIATSL DAFQNCSLFG FDSKKDKSNM  720
V
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143542.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269780.0AK226978.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL09-39-I17.
GenBankAY0640680.0AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
GenBankAY0963760.0AY096376.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143542.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X2
RefseqXP_013748393.10.0TSL-kinase interacting protein 1-like isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLM4CLZ30.0M4CLZ3_BRARP; Uncharacterized protein
STRINGBra005230.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1