PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143572.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 187aa    MW: 21841.7 Da    PI: 8.2051
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143572.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.1e-1974128357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     k+ ++t+eql+ Le  F+++++++ +++ +L+k+lgL+ rq+ vWFqNr+a++k+
  XP_009143572.1  74 KKKKMTNEQLKLLEISFQEEMKLDPDRKMKLSKELGLQPRQIAVWFQNRKARWKN 128
                     67899************************************************95 PP
2HD-ZIP_I/II110.31.4e-3574164292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kk+++++eq+klLE sF+ee kL+p+rK++l++eLglqprq+avWFqnr+AR+k+kqlE+ y++L++++d + +e++ L++e  +L++ ++
  XP_009143572.1  74 KKKKMTNEQLKLLEISFQEEMKLDPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLYKSLRQEFDVICQEKKLLQEELMQLKAMIR 164
                     9**************************************************************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-1856131IPR009057Homeodomain-like
PROSITE profilePS5007116.11569129IPR001356Homeobox domain
SMARTSM003893.8E-1774133IPR001356Homeobox domain
CDDcd000861.96E-1574130No hitNo description
PfamPF000464.9E-1674128IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-2076136IPR009057Homeodomain-like
PRINTSPR000317.8E-5100109IPR000047Helix-turn-helix motif
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
PRINTSPR000317.8E-5109125IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEEDNMECWT SPFINGQSSS NFIYPFHSFN NVSGTILETQ GGRPLHEHYY AAPPAMVESS  60
YGEASNTNNG YETKKKKMTN EQLKLLEISF QEEMKLDPDR KMKLSKELGL QPRQIAVWFQ  120
NRKARWKNKQ LEHLYKSLRQ EFDVICQEKK LLQEELMQLK AMIRENGASN NKQQTWGNAL  180
SAQFQLN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00049PBMTransfer from AT2G36610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143572.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565698e-61DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143572.11e-138PREDICTED: homeobox-leucine zipper protein ATHB-22
SwissprotQ4PSR72e-73ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBLM4CM221e-137M4CM22_BRARP; Uncharacterized protein
STRINGBra005259.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36610.14e-66homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]