PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143674.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 223aa    MW: 24319.7 Da    PI: 6.4984
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143674.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.7e-0675100126
                     --S---SGGGGTS--TTTT.T-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGd.rCkFaHg 26 
                     +kt+lC++f++ G C+y + +C+FaH+
  XP_009143674.1  75 FKTKLCCNFRA-GSCPYAAsTCHFAHS 100
                     69*********.*****7527*****7 PP
2zf-CCCH39.31.1e-12171196126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+ C+ +  +G+C++G +C+FaHg
  XP_009143674.1 171 WKTRMCNKWEMSGYCPFGTNCRFAHG 196
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-1372107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.49E-573106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.66274102IPR000571Zinc finger, CCCH-type
SMARTSM003560.001374101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314115143IPR000571Zinc finger, CCCH-type
SMARTSM003560.41115142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-7115142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-8116142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-16168200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-10169201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432170198IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-7170197IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8171196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSHRRDSTTD AVHVIPTNDP PPENPFPSPV WAATEDDYSR LSAANNDDTE SPCKKTRGSP  60
SPSSSSSSEI GKAFFKTKLC CNFRAGSCPY AASTCHFAHS AEELRRPTAG ESVRPYKGRH  120
CKKFYSGEGC PYGESCTFLH DEASRNRESF AVSLGHRGGG NVIAAAASPN WKTRMCNKWE  180
MSGYCPFGTN CRFAHGASEL HRFGGGLVEE EEEEEEEGLH SGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143674.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9535560.0EU953556.1 Zea mays clone 1434304 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018514785.11e-157PREDICTED: zinc finger CCCH domain-containing protein 28 isoform X1
SwissprotQ9LQM32e-76C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLM4CMA41e-155M4CMA4_BRARP; Uncharacterized protein
STRINGBra005342.1-P1e-156(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-63C3H family protein