PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143857.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 252aa    MW: 29104 Da    PI: 9.0931
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143857.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.33.3e-49141341128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yL +kv+g  l++  vi+e+di+k+ePwdLp      ++e yfFs r+ ky++g+r+nr+t sgyWkatg d++v + 
  XP_009143857.1  14 LPPGFRFHPTDEELVVHYLSRKVSGLLLPA-YVIPEIDICKAEPWDLPGD---CNSERYFFSMREAKYPNGNRSNRSTGSGYWKATGIDRQVGK- 103
                     79***************************9.89***************44...35699**********************************77. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ g+kktLvfykg+ p+g++t+Wv+heyrl
  XP_009143857.1 104 --KVLGMKKTLVFYKGKPPNGTRTNWVLHEYRL 134
                     ..89***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-5710156IPR003441NAC domain
PROSITE profilePS5100556.03814156IPR003441NAC domain
PfamPF023659.5E-2715134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEKPCSIKNR ELRLPPGFRF HPTDEELVVH YLSRKVSGLL LPAYVIPEID ICKAEPWDLP  60
GDCNSERYFF SMREAKYPNG NRSNRSTGSG YWKATGIDRQ VGKKVLGMKK TLVFYKGKPP  120
NGTRTNWVLH EYRLVDSQHE SYGENMNWVL CRVFLKKRSN NNNKKKKEDE REKKEEIESD  180
DNKSTCPIFY DFMRNDVKKG KCCTLNLTRC SSPSSASSSV CSSALIQTSL NSDSDNHHQE  240
TSCRENKFHL FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-511115914168NO APICAL MERISTEM PROTEIN
1ut4_B8e-511115914168NO APICAL MERISTEM PROTEIN
1ut7_A8e-511115914168NO APICAL MERISTEM PROTEIN
1ut7_B8e-511115914168NO APICAL MERISTEM PROTEIN
3swm_A8e-511115917171NAC domain-containing protein 19
3swm_B8e-511115917171NAC domain-containing protein 19
3swm_C8e-511115917171NAC domain-containing protein 19
3swm_D8e-511115917171NAC domain-containing protein 19
3swp_A8e-511115917171NAC domain-containing protein 19
3swp_B8e-511115917171NAC domain-containing protein 19
3swp_C8e-511115917171NAC domain-containing protein 19
3swp_D8e-511115917171NAC domain-containing protein 19
4dul_A8e-511115914168NAC domain-containing protein 19
4dul_B8e-511115914168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143857.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756680.0KM975668.1 Brassica napus NAC transcription factor 41.1 (NAC41.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303076.10.0NAC domain-containing protein 41-like
RefseqXP_009143857.10.0PREDICTED: NAC domain-containing protein 41-like
SwissprotO227981e-108NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A078FWR00.0A0A078FWR0_BRANA; BnaA05g10110D protein
TrEMBLA0A397ZCD50.0A0A397ZCD5_BRACM; Uncharacterized protein
TrEMBLM4CMQ40.0M4CMQ4_BRARP; Uncharacterized protein
STRINGBra005492.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-103NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]