PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143975.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 704aa    MW: 78630.8 Da    PI: 5.8705
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143975.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-1961116156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R++ k
  XP_009143975.1  61 RKRYHRHTQQQIQEMENFFKECPHPDDNQRKELSRQLGLDHLQIKFWFQNKRTQNK 116
                     789999***********************************************998 PP
2START158.65e-502334512206
                     HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                     la  a+ el+++a+ +ep+W++ +   +++  e++++++ + +     +++ea+r++++v+m +++ v  l+d++  W++++a    +a t++++
  XP_009143975.1 233 LAVGAMSELIALAQMNEPLWKEGVhgMILDLNEYTRNLQNGLGpkpvgFRTEASRETAIVFMRHMEIVHRLMDVN-LWSTMFAgmvgRAITHDTL 326
                     67889*******************9999999999999966555999*****************************.*******999999999999 PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                      +g      g+++lm+ae+q+lsplv+ R+ +fvRy++q+g+g w +vd+S+d+  ++  ++++ R   +pSg+li++++n+ s+vtwvehv+++
  XP_009143975.1 327 LTGrqgnldGTIHLMTAEFQVLSPLVSnRECYFVRYCKQHGEGLWGVVDISIDHLIPNL-EPKCLR---RPSGCLIQDMPNRVSRVTWVEHVEVD 417
                     999******************************************************98.788888...*************************9 PP

                     SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206
                     +    h+++++l++sg+a ga++w+++l+rqce+
  XP_009143975.1 418 DGGElHAMFKHLLNSGQALGANRWLSALDRQCER 451
                     88878***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-2043116IPR009057Homeodomain-like
SuperFamilySSF466897.52E-1850119IPR009057Homeodomain-like
PROSITE profilePS5007116.55258118IPR001356Homeobox domain
SMARTSM003891.3E-1659122IPR001356Homeobox domain
CDDcd000868.29E-1860119No hitNo description
PfamPF000461.1E-1661116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PROSITE profilePS5084833.596223454IPR002913START domain
SuperFamilySSF559615.89E-28225452No hitNo description
CDDcd088751.61E-94227450No hitNo description
SMARTSM002348.9E-43232451IPR002913START domain
PfamPF018527.8E-41233451IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-4334436IPR023393START-like domain
SuperFamilySSF559615.1E-13497685No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MSLPNYMEPV DDVNNNNNGE TDNNENENNN NMNGGASFGD EEFDSENQEY GNTQDPRAAK  60
RKRYHRHTQQ QIQEMENFFK ECPHPDDNQR KELSRQLGLD HLQIKFWFQN KRTQNKNHQE  120
RHENLQLREE NTRLRADNHH FREGLANASC PNCGGPTAVG EMSFEEHHLL LENAKLTEEI  180
RQLSEVAKYT GKAVMRYPVL PTPNQAPPFE PPMITNGSLG SVKEADKPLL IELAVGAMSE  240
LIALAQMNEP LWKEGVHGMI LDLNEYTRNL QNGLGPKPVG FRTEASRETA IVFMRHMEIV  300
HRLMDVNLWS TMFAGMVGRA ITHDTLLTGR QGNLDGTIHL MTAEFQVLSP LVSNRECYFV  360
RYCKQHGEGL WGVVDISIDH LIPNLEPKCL RRPSGCLIQD MPNRVSRVTW VEHVEVDDGG  420
ELHAMFKHLL NSGQALGANR WLSALDRQCE RLAIMMAPNI PSIEPGGQIT VTNNAKQSLL  480
ELVERMSRGF FDGVTTSNAD IWMNLGGYTG DSVKVTTRTS LNDPGRPEGL ILCAAHSFWV  540
PAPPTTVFDY LRDENNRVNW DVLFLGGNPQ KLTHIFNGRD NRNCVSLLRS PNTSQSEMMM  600
IEKSSTEPAA SFLVYAPVSV PSMEKVLNGG DPKYVPLLPS GFAILPDGTA QPGKAGGSLV  660
NVAFQMLVDS YPSGSLTFSS VSTIESLILA AANKIKACFT QQTP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143975.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143974.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLM4CN000.0M4CN00_BRARP; Uncharacterized protein
STRINGBra005588.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2