PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144357.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 377aa    MW: 41571.6 Da    PI: 8.7899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46e-06130153123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ Cg+ F+ + +L++Hi   H
  XP_009144357.1 130 FPCTTCGEIFPKPTLLEHHIAIkH 153
                     89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.099130158IPR007087Zinc finger, C2H2
PROSITE patternPS000280132153IPR007087Zinc finger, C2H2
SuperFamilySSF563992.49E-11155376No hitNo description
Gene3DG3DSA:3.90.228.104.3E-10157376IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAARKLGSLL RQHFFSLFFL FVGCFFFPKG GDLRQKRRKK KKLRTVTSGS GLSSSWTYLK  60
RVFLSTTRIS KSRNQTHPNG PLTTLTSARS SQNSLVTLVQ PDPETRTENG FSDISSSDSP  120
PFLPLRSEIF PCTTCGEIFP KPTLLEHHIA IKHAVSELVD GESSTNIVKI IFKSGWPEQG  180
DNKKIPEIHR ILKIHNSPKI LARFEEYREF VKAKAARGSG NGRWDDERCV VDGNELLRFY  240
CSTFMCSLGQ NGSSGLCGHQ YCSICGIIGS GFSPKLDGIA TFATGWRGHV AVPEEVEEEF  300
GFMNVKRAML VCRVVAGRVG CDLIADDDVD KSGGGYDSLV GQGSGSKSGA LLRIDDEELL  360
VFNPRAVLPC FVIVYTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541KRRKKKK
23642RRKKKKL
33743RKKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144357.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325770.0AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144357.10.0PREDICTED: uncharacterized protein LOC103868017
TrEMBLA0A397Z9U10.0A0A397Z9U1_BRACM; Uncharacterized protein
TrEMBLM4DPC80.0M4DPC8_BRARP; Uncharacterized protein
STRINGBra018369.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-169C2H2 family protein