PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009144473.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 319aa MW: 35360.5 Da PI: 6.4096

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009144473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.7	2.8e-10	166	214	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq XP_009144473.1 166 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 214 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-17	161	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.42E-11	161	218	No hit	No description
PROSITE profile	PS50888	15.485	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-17	164	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-7	166	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	169	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MGGENNEDWD PVVSGGGFSS SHYTSMVMDN PGMSCFPHYQ TGSGYPDMPP SLLPFGDCVG 60 GGPVLGSDKK GESVGRLIRA GESHQVSDDV VLGASPSRKR RQLEAESSQR NKKAVEEFLE 120 EPQRGSDQSQ KKHKNDQSKE KESSQSEEAP EKNYIHMRAR RGQATNSHSL AERVRREKIS 180 ERMRLLQELV PGCNKITGKA VMLDEIINYV QSLQQQVEFL SMKLATVNPE LNIDIDRILA 240 KDIMQSRDVR TTPTLGLNPF SGFQGTIPNV PTTTNSQYNP LHQTTLESEL QSLYQMGFVS 300 NPSTMSSFSP NNGRLKPEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	101	SRKRRQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009144473.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221806	0.0	AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBank	AK229309	0.0	AK229309.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, partial cds, clone: RAFL16-57-I01.
GenBank	BT012655	0.0	BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144473.1	0.0	PREDICTED: transcription factor bHLH74-like isoform X2
Swissprot	Q6NKN9	1e-180	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A0D3DNU2	0.0	A0A0D3DNU2_BRAOL; Uncharacterized protein
STRING	Bo8g059100.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-172	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]