PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009144630.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 290aa MW: 30890.1 Da PI: 6.8048

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009144630.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.9e-09	135	179	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L XP_009144630.1 135 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 179 99*********************55......9************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.58E-14	129	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.802	130	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-13	133	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-6	135	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-10	136	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
TPSDDFFDQI LGLPNFPASS ATGLFGGLGG GGGAPPMMLQ VGSGEEGSGF HSQMFPLGLS 60 LEQGKGPGVL RPEGGGGLGS GKQFSDDVLD HPSSSMKPVF PGQPMQQPAP SAPPHQPTSI 120 RPRVRARHGQ ATDPHSIAER LRRERIAERI RALQELVPTV NKTDRAAMID EIVDYVKFLR 180 LQVKVWSMSR LGGAGAVAPL VTDMPLPSSV EDEGSEGGRT PQAAWEKGSN DGTERQVAKL 240 MEKNVWAAMQ LLQSKTLCMM PISLAMAIYH SQPPDTSSSV VKPETNPPRP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	144	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.18191	1e-130	flower\| root\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009144630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352765	0.0	AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144630.1	0.0	PREDICTED: transcription factor UNE12-like, partial
Swissprot	O22768	1e-153	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A3P6A7S0	0.0	A0A3P6A7S0_BRACM; Uncharacterized protein
TrEMBL	M4DPU8	0.0	M4DPU8_BRARP; Uncharacterized protein
STRING	Bra018539.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-122	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]