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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009144653.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
GRAS |
| Protein Properties |
Length: 535aa MW: 59269.4 Da PI: 6.5104 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009144653.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 401.6 | 7.9e-123 | 158 | 528 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
l+e+L+e+A+av++gd+++a ++ l++++s +g+p+qRl +y++e+L+arl++++ ++y+al+++e + e ++++ +++e++P+ kf++
XP_009144653.1 158 LKEVLVEAAQAVAEGDFAAACGFIDVLEQMVSVSGTPIQRLGTYMAEGLRARLQGTGGNIYRALKCNEPT---GRELMSYMGVLYEICPYWKFAY 249
5789*****************************************************************9...99999999************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
+aN aIleav+ge+rvHiiDf+i qG+Q++ L+++La+ p+gpp lR+Tgv++++s + l+ +ge+La+ A+++gvpfef+ + + +
XP_009144653.1 250 NAANAAILEAVAGEKRVHIIDFQIAQGTQYMFLINELAKLPGGPPLLRVTGVDDSQSRfaRGGGLNLVGEKLANKAQSCGVPFEFHD-AIMSGCK 343
******************************************************99989999*************************.7888999 PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl Pk+v++veqe+++n+++Fl rf+e+l+yy+a+f+s++a pr++++ri
XP_009144653.1 344 VHREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLRLIKSLGPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRI 438
99********************************************************************************************* PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ E+++ +r+ivn++ace++er+erhe l+kWr r+++aGF p+s++aa a+ +l+ ++++ y++ e++g+l+l Wk+rp+ ++SaW+
XP_009144653.1 439 SAEQHCAARDIVNMIACEERERVERHEVLGKWRVRMMMAGFMGWPVSSSAAFAASEMLKGYDKN-YKLGENEGALYLFWKRRPMATCSAWK 528
**************************************************************66.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 535 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQV HCSPQFQVID KKNKKSAFSD TTPSKESFFT LESSTASGPL 60
PSYESPSVSI TSGRSPFSPQ ASCISDLHPS PENIYESPLS GASSHVYDEA HVKNKIRELE 120
VSLLSVDPKV EEYSGFSPAA GKSWNWDELL ALTPQLDLKE VLVEAAQAVA EGDFAAACGF 180
IDVLEQMVSV SGTPIQRLGT YMAEGLRARL QGTGGNIYRA LKCNEPTGRE LMSYMGVLYE 240
ICPYWKFAYN AANAAILEAV AGEKRVHIID FQIAQGTQYM FLINELAKLP GGPPLLRVTG 300
VDDSQSRFAR GGGLNLVGEK LANKAQSCGV PFEFHDAIMS GCKVHREHLG VEPGFAVVVN 360
FPYVLHHMPD ESVSVENHRD RLLRLIKSLG PKLVTLVEQE SNTNTSPFLS RFVETLDYYT 420
AMFESIDAAR PRDDKQRISA EQHCAARDIV NMIACEERER VERHEVLGKW RVRMMMAGFM 480
GWPVSSSAAF AASEMLKGYD KNYKLGENEG ALYLFWKRRP MATCSAWKPN PNQIV
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC232568 | 0.0 | AC232568.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH122A22, complete sequence. |
