PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009144664.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 300aa MW: 34161.2 Da PI: 5.7772

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009144664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	101.6	6.6e-32	36	130	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++r+w+e+De+++L+Gl++++ kt +ps d+d+f+ v++si++++sk+ql++K+r+L++Kf +++++++g++p f++ d+++f++s++iWg XP_009144664.1 36 IKRIWNEDDELSILKGLVEYRVKTRHDPSFDWDGFFCSVQGSIHVRFSKEQLFSKVRKLRRKFVLHMERIDRGEDPLFTRLTDSQAFGYSNMIWG 130 68********************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.6E-26	37	130	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MKRLNFSDTS LQNSPSEEVS TKKNKNKKKK LASPVIKRIW NEDDELSILK GLVEYRVKTR 60 HDPSFDWDGF FCSVQGSIHV RFSKEQLFSK VRKLRRKFVL HMERIDRGED PLFTRLTDSQ 120 AFGYSNMIWG LNQAEVAANA GGTEKAPGDT QEDEHLDNAG HVNYNGVESS KLDGKESEFA 180 NGGMESVMQI ESDENGFREN GRVSNDEPVN ENGAEKGEVD GKETHDDELR VVEDAFETTI 240 LQGLSDWQRK LQLKKLMMNL GTEKRKELSN EWKALCSEEV KLKIKKLRFT VKLVEAANDG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.28746	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots. {ECO:0000269\|PubMed:18162594}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893, ECO:0000305\|PubMed:18162594}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009144664.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144664.1	0.0	PREDICTED: GLABROUS1 enhancer-binding protein-like 1
Refseq	XP_009144666.1	0.0	PREDICTED: GLABROUS1 enhancer-binding protein-like 1
Swissprot	Q8VYD2	1e-71	STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1
TrEMBL	A0A397Z9U6	0.0	A0A397Z9U6_BRACM; Uncharacterized protein
TrEMBL	M4FEH9	0.0	M4FEH9_BRARP; Uncharacterized protein
STRING	Bra039500.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25650.1	1e-73	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]