PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144711.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 346aa    MW: 39800.2 Da    PI: 6.0465
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144711.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM769.1e-2471375128
             NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknra......tksgyWkatgkdke 91 
                     ++F+P d++lv +yL+++v++ k     +i+++++y+ ePw Lp   + + +e+ w++F+ r ++   g+r++r+       + g+W ++g +k+
  XP_009144711.1   7 LKFSPIDQNLVGYYLRNRVDTGKD---GFITDIKLYEDEPWLLPhVkNDQFKENMWFYFVLRTRNL--GSRPKRTvpgrgsSNGGTWTTSGVKKA 96 
                     79*******************994...45***************42233337889******99975..7788886566666779*********** PP

             NAM  92 vlsk..kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                     ++++   + ++g k+ L+++k+   + kg  t W+m ey l
  XP_009144711.1  97 ITDRnnPKVVIGYKTELAYHKKvkGKLKGDTTGWCMTEYWL 137
                     ***85455669*********7533677899*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.8943156IPR003441NAC domain
SuperFamilySSF1019411.57E-264154IPR003441NAC domain
PfamPF023656.9E-146136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAHPRDLKFS PIDQNLVGYY LRNRVDTGKD GFITDIKLYE DEPWLLPHVK NDQFKENMWF  60
YFVLRTRNLG SRPKRTVPGR GSSNGGTWTT SGVKKAITDR NNPKVVIGYK TELAYHKKVK  120
GKLKGDTTGW CMTEYWLASE NDAQFQEVVL CHLRDNNKMV VDQPPESKNG DNDIATEQPQ  180
QGNSDDNNNR LLDFTHQQRP LIPPFEGQGL RLQTIMGYSD KATQEQQHPP ISPPPQRQDS  240
GSINNALVIM EDECVSQDEI FNLADLEAGI THPQQQHRQM MVDPYDDISF SRLAMPNNLI  300
YHHEDSWHQD TSPWNNTNPR GLIFNSHGYE IQDQTVTKGH NQDSYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144711.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144711.10.0PREDICTED: NAC domain-containing protein 6-like
TrEMBLA0A3P5ZDB60.0A0A3P5ZDB6_BRACM; Uncharacterized protein
STRINGBra037078.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.16e-14NAC domain containing protein 6