PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009144836.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 666aa MW: 77036.4 Da PI: 7.6109

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009144836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.5e-22	78	161	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+HnH+l XP_009144836.1 78 NYYNCYANEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRVNDAN-----RVRKETRTGCPAMVRMRQVDSKRWRVLEVTLDHNHSL 161 69**************************************99988.....99*******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-19	78	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-24	268	360	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.619	550	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-4	556	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-5	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MERSDSGDVD VHASAYLQTD ETHERDDGGE ADHEIDDVGF TQNEQRKSEH QEEEFVEGKE 60 FDAPAVGMEF ESYDDGYNYY NCYANEVGFR VRVKNSWFKR RSKEKYGAVL CCSSQGFKRV 120 NDANRVRKET RTGCPAMVRM RQVDSKRWRV LEVTLDHNHS LGYKSVKRTG TKRKCADSSL 180 KLYKARVMDV GNSVIPNSAP KKQFQSSSSD VLNLRRGDSS AIYNYFCRMQ LTNPNFFYLM 240 DINDEGQLRN VFWADAFSRV SCSFFNDVVF IDNAYISGKF EIPLVTLVGV NHHGQTTLLG 300 CGLLAGETVE SYHWLLKAWF GVMKCSPQTI VTDRCKPLEA AVSQVFPRCH HRFSVAHIMR 360 KVPEKLGGLV SYDGVRKAFT KAVYETLKVV DFEAAWGFMV HSFGIVDNEW LRSLYEDRAR 420 WAPVYLIDTF FAGLATCRPG ESLSPFFERY VHKQTPLKEF LDKYELALHR KRREETLAEL 480 ESLTLKTKCS FETQLSRVYT REMFKKFQVE VEEMYSCFST TQVHVDGPLV IFLVKERVQG 540 ESNRREVRDF EVLYNRSVGE VRCICSCFYF YGYLCRHALC VLNFNGVEEI PLRYILPRWR 600 KDYKRVHAAD NGFVDGTDRV QRFDQLYKGA LAVVEKGAVS LDRYKVAMQV LEQSLDRVHS 660 VEEKQD

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MERSDSGDVD VHASAYLQTD ETHERDDGGE ADHEIDDVGF TQNEQRKSEH QEEEFVEGKE  60
FDAPAVGMEF ESYDDGYNYY NCYANEVGFR VRVKNSWFKR RSKEKYGAVL CCSSQGFKRV  120
NDANRVRKET RTGCPAMVRM RQVDSKRWRV LEVTLDHNHS LGYKSVKRTG TKRKCADSSL  180
KLYKARVMDV GNSVIPNSAP KKQFQSSSSD VLNLRRGDSS AIYNYFCRMQ LTNPNFFYLM  240
DINDEGQLRN VFWADAFSRV SCSFFNDVVF IDNAYISGKF EIPLVTLVGV NHHGQTTLLG  300
CGLLAGETVE SYHWLLKAWF GVMKCSPQTI VTDRCKPLEA AVSQVFPRCH HRFSVAHIMR  360
KVPEKLGGLV SYDGVRKAFT KAVYETLKVV DFEAAWGFMV HSFGIVDNEW LRSLYEDRAR  420
WAPVYLIDTF FAGLATCRPG ESLSPFFERY VHKQTPLKEF LDKYELALHR KRREETLAEL  480
ESLTLKTKCS FETQLSRVYT REMFKKFQVE VEEMYSCFST TQVHVDGPLV IFLVKERVQG  540
ESNRREVRDF EVLYNRSVGE VRCICSCFYF YGYLCRHALC VLNFNGVEEI PLRYILPRWR  600
KDYKRVHAAD NGFVDGTDRV QRFDQLYKGA LAVVEKGAVS LDRYKVAMQV LEQSLDRVHS  660
VEEKQD

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009144836.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144836.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A3P5ZFT0	0.0	A0A3P5ZFT0_BRACM; Uncharacterized protein
STRING	Bo6g039630.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]