PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009144925.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 225aa MW: 25344.7 Da PI: 6.7885

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009144925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.4e-11	73	119	4	53
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRd++N++f eL ++l + +++K +K++i A++ +++ XP_009144925.1 73 SKACREKQRRDKLNEKFTELSSVLEPG---RAPKTDKVAIINDAIRMVNQ 119 5678********************9...9************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.709	69	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-12	71	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-7	72	125	No hit	No description
Pfam	PF00010	1.6E-8	73	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-7	75	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-12	75	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MVFPENTNWL SDYPLLIDGV FSHHSPTFPW QIDGSATTVS VEEVDGFLCD SDVIKEPGSK 60 KRVKSESNAG PSSKACREKQ RRDKLNEKFT ELSSVLEPGR APKTDKVAII NDAIRMVNQA 120 RDEAQRLKDL NSNLQEKIKE LKDEKNELRD EKQKLKTEKD RIEQQLKAIN TQPCFLPNPP 180 TLSQAQAPGS KLVPFTTYPG FAMWQFMPPA AVDTSQDHVL RPPVA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.13412	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009144925.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353406	1e-176	AK353406.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-I24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144925.1	1e-167	PREDICTED: transcription factor bHLH115
Swissprot	Q9C682	1e-139	BH115_ARATH; Transcription factor bHLH115
TrEMBL	M4ENT9	1e-165	M4ENT9_BRARP; Uncharacterized protein
STRING	Bra030459.1-P	1e-166	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1437	28	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	1e-142	bHLH family protein

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]