PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145103.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 326aa    MW: 36960.6 Da    PI: 5.9686
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like993.3e-31193248156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++WtpeLH+ Fv+a++qLGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+
  XP_009145103.1 193 KQRRCWTPELHRLFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 248
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.565190250IPR017930Myb domain
SuperFamilySSF466898.15E-18191251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-27192251IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-26193248IPR006447Myb domain, plants
PfamPF002492.9E-9195246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGSLGDELSL GQRRHSSIPT TICRSKIMNV AVEQGCKLEE HVQKLEEEKR KIQGSELELP  60
LCLQMLNDAI SYLKKETETD TQPLLKDFIS LSKPIREEHD EELFKEKKFQ LWRENDRISN  120
ARFSDTLEIE RDEEKSSNSL YMLLSPGMTT PKVETGLGLG LTSSSMVKGR RKLVASSSVP  180
QPPPYLQQQS LRKQRRCWTP ELHRLFVDAL QQLGGPGVAT PKQIREHMQE EGLTNDEVKS  240
HLQKYRLHIR KSDSNLEKQS VVVLGFNLWN SSQEVEESGE GGETSKRNNS QSDSPQGPLQ  300
LPCTTTTTCG DSSMEDAEDA KSERRY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145103.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216311e-113AK221631.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145103.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9FX841e-122HHO6_ARATH; Transcription factor HHO6
TrEMBLM4FHT40.0M4FHT4_BRARP; Uncharacterized protein
STRINGBra040662.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139271824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.11e-102G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]