PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145268.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 673aa    MW: 74079.6 Da    PI: 7.0563
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.32.3e-16383421240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+CnCkkskClk+YCeCfaag++C e C+C dC+N+ 
  XP_009145268.1 383 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCVDCFNRP 421
                     689**********************************75 PP
2TCR52.87.9e-17468507140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+gCnCkks+ClkkYCeCf++g+ Cs +C+Ce+CkN  
  XP_009145268.1 468 RHKRGCNCKKSNCLKKYCECFQSGVGCSINCRCEGCKNAF 507
                     589***********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.4E-19382423IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.515383508IPR005172CRC domain
PfamPF036385.6E-12385420IPR005172CRC domain
SMARTSM011145.7E-17468509IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-12470506IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MDNSQKKKIE TPTPKSKFED SPVFNYINNL SPIEAVRSIP TVQTFNSLSF TSPPPVFTSP  60
HASFHRESRF FRCHNSVERS KALESLDRSV STQEVVVASG EVDLNKEATL EDQEEETSCD  120
RVDSPGTGDI VTQVLLDPSG GAPQGEDDGS SSQDVSVGLR KILDAQKENG TPRLMADAAE  180
LLVFRSPNDS EAFGCLVDKI SSSERRFCAG VKLTKHRDIT KDVPANDNQP LAVVPNQLVS  240
NLHRGSMRRR CLDFEVLGKR KKDIADDDQQ TVGDNKAESS SKCVVPGIGL HLNAIAMASR  300
GIKINTIHED STSVEIQKSF LGSTTPVQSQ DIMRETLDQA ESEPGKGLAV EEETLKPLVF  360
EELNQDSLQK KKRKVEEPGE GDSCKRCNCK KSKCLKLYCE CFAAGVYCIE PCSCVDCFNR  420
PIHEDTVLAT RKQIESRNPL AFAPKVIRNS DSIMETSDDA SKTPASARHK RGCNCKKSNC  480
LKKYCECFQS GVGCSINCRC EGCKNAFGKK DAYLLAIMES KQEEDLSKIQ QNSDLSKEVE  540
QNHPSSDQPS TPLPPYRHMV VHQPFLSKNR LPPTQFFLGA GSSSFRKPDG DLAQARIEKK  600
PLETVTEDKT EIMPEILSNT PITTVKAISP NSKRVSPPHI GSSESGSILG KRTNGRKLIL  660
RSIPAFPSLN PNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1638550512120Protein lin-54 homolog
5fd3_B2e-1638550512120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247261RRRCLDFEVLGKRKK
2369374KKKRKV
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}.
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtProbable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00370DAPTransfer from AT3G22780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145268.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145268.10.0PREDICTED: CRC domain-containing protein TSO1
SwissprotQ9LUI30.0TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBLA0A397ZBQ00.0A0A397ZBQ0_BRACM; Uncharacterized protein
STRINGBra033919.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14672891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.10.0Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Lu T,Dou Y,Zhang C
    Fuzzy clustering of CPP family in plants with evolution and interaction analyses.
    BMC Bioinformatics, 2013. 14 Suppl 13: p. S10
    [PMID:24268301]
  2. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]
  3. Wang W,Sijacic P,Xu P,Lian H,Liu Z
    Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054
    [PMID:29535223]