PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145289.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 125aa    MW: 13959 Da    PI: 8.2779
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145289.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.8e-20241031898
                     --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     lp   +++  + k + k+ +l +++g+sW+v l+++ ++g+y++t+GW++F+ +n+ + gD +vF ++g+ ++++++ v+ 
  XP_009145289.1  24 LPVGATSSTALHK-QCKETILVNKEGNSWNVSLRFSESGGKYYITRGWRKFCLDNRCEIGDLFVFNVVGDGKTTPLMCVCP 103
                     3444444446665.5579999*************************************************99999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.6E-1015105IPR003340B3 DNA binding domain
CDDcd100173.53E-141987No hitNo description
SuperFamilySSF1019361.2E-161999IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1521107IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-1826103IPR003340B3 DNA binding domain
PROSITE profilePS5086312.12539105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MGLAGRTGAM SFFSFDYCFL AEHLPVGATS STALHKQCKE TILVNKEGNS WNVSLRFSES  60
GGKYYITRGW RKFCLDNRCE IGDLFVFNVV GDGKTTPLMC VCPERKECSE ILSKYLSRKS  120
SESST
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145289.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325777e-79AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745597.13e-75B3 domain-containing protein REM2-like
RefseqXP_022553352.13e-75B3 domain-containing protein REM2-like
TrEMBLM4ER791e-74M4ER79_BRARP; Uncharacterized protein
STRINGBra031302.1-P2e-75(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.15e-16B3 family protein