PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145478.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 1119aa    MW: 126175 Da    PI: 8.2235
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-084681340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++eE e+++++ +++G++ Wk++a  +   R+++++
   XP_009145478.1 46 QWSKEELERFYEGYRKFGKE-WKKVAGFVH-SRSAEMV 81
                     6*******************.********9.9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.4E-104292IPR009057Homeodomain-like
SMARTSM007179.4E-44391IPR001005SANT/Myb domain
PfamPF002496.6E-74681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-54682IPR009057Homeodomain-like
CDDcd001671.28E-44789No hitNo description
SMARTSM011357.0E-61595696IPR033471DIRP domain
PfamPF065845.4E-30595694IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MAPSRSTKSK YKRTPRPKDV SPHKEEESMS KTKPRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA GFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLTAMMTD HYAVLHGGSD  120
SEQEKNESLR SASKRSKLKS SDHPSAGLEG LSDRLQFRSS SGYLPSLKKR RTETMPRAVG  180
KRTPRIPVSY TPEKDTRERY MSPVKKSLNQ KGGDTDDDME HEIALALTEA SQRGGSTKNP  240
HTPNRKSKML SPDKKSEIMR ADIDMAIAKL RATDTEDARC EPSLESTEAE NVDNPGSRNE  300
LTNGEDRSAM KEKQYYRRRF GIREDDSKEA CSGTDEAQSL GTLDEKFKQE GDGKFLKFTY  360
RSSRRKSKKS LFTADEDTAC DALQTLADLS LMMPETATDT ESSVQAEEKR AGKASDYKET  420
DLASMSKRGS LRKSKQKRPV CNDLCNTEPE RKSPSSSVIR KGRQKASPAK VPKDELAAIS  480
QVTEPSKNKG IGEEIKPVGR GKRSASIRNS YDKKSVKPQD RTSSSNNMVD DDESAPSTAA  540
TQKEVNLPTK VRSRRKIVTE KPLTIDDVKK SEILEKFSHC ISSFKARRWC LFEWFYSAID  600
YPWFARQEFV EYLDHVGLGH VPRLTRVEWG VIRSSLGKPR RFSQQFLKEE KEKLYLYRDS  660
VRKHYDELNT GMREGLPMDL ARPLNVSQRV ICLHPKSREI HDGSVLTVDH CRYRIQFDNP  720
ELGVEFVKDT ECMPLNPLEN MPASLAKHYV LSNHHRQNSS EEKMHERVKE SMPEGYPKLS  780
CEAGYPLSSP NYIINNSLKQ EKVEISSSDP QAQNGVDEAL AVQLFNSQPS NIGHIHAREA  840
DVQALSELTR ALDKKELVLR ELNYMNNEVV ESEKDGHNAL KDSESFKKQY AAVLFQLSEI  900
NEQVSLALLG LRQRNTYQEN VPSSSITHMS NSGEPDGQLT YVDNDASDTN GFHVSEIVDS  960
SRVKARKMVF RAIQALALLR KDENNVVNIE EAIDFVNNQL STDESEGSSV QQTQASQDQR  1020
LPSTPNLSTS TQHADDSHVN PLDQNDLQVP SELVSRCMAT LLMIQRCTER QFPPSEVAQV  1080
LDSAVASLQP CCSQNLPIYT EIQKCMGIIR NQILALVPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338PRKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.289700.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145478.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5834970.0AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145478.10.0PREDICTED: protein ALWAYS EARLY 3
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A397ZBN10.0A0A397ZBN1_BRACM; Uncharacterized protein
STRINGBra031282.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127142427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]