PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145531.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 299aa    MW: 33121.4 Da    PI: 7.4731
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.64.3e-33163219158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+Il+RRq+Rak+e e kl +ksrkpylheSRh+hA+rRpRg+gGrF
  XP_009145531.1 163 QEPVYVNAKQYQAILRRRQARAKAELEMKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 219
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.2E-36161222IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.414162222IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.1E-29164219IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-24165187IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860167187IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-24196219IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MESEDMHSKP DGGNQIVSEA VHHHSINSLN PWQRAAAAAC NASSLVEEAV EKSIALESQD  60
NWESTNGSKS PSHKDENGNK ESPQVTISPQ ESAGDYSEKS QELVHVGVTG PPHPQPVSHT  120
GWASSNPYQD PYYAGMMGAY PMAYVPYGGM PHSRMPLPPE VAQEPVYVNA KQYQAILRRR  180
QARAKAELEM KLIKSRKPYL HESRHQHAMR RPRGTGGRFA KKTNTEASKP KPGEKNNATQ  240
SPTSSHSDQP EAWNDECRKQ SEEMQSSASK RREEAEDCSG QQWNSISSNH TSQARLAIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19163219258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.206110.0bud| flower| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145531.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145531.10.0PREDICTED: nuclear transcription factor Y subunit A-9 isoform X2
RefseqXP_013749308.10.0nuclear transcription factor Y subunit A-9-like isoform X2
SwissprotQ945M91e-135NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A397ZFK90.0A0A397ZFK9_BRACM; Uncharacterized protein
TrEMBLM4ER190.0M4ER19_BRARP; Uncharacterized protein
STRINGBra031242.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-136nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]