PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145533.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 295aa    MW: 32629 Da    PI: 8.457
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.64.2e-33159215158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+Il+RRq+Rak+e e kl +ksrkpylheSRh+hA+rRpRg+gGrF
  XP_009145533.1 159 QEPVYVNAKQYQAILRRRQARAKAELEMKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 215
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.2E-36157218IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.414158218IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.9E-29160215IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-24161183IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860163183IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-24192215IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MHSKPDGGNQ IVSEAVHHHS INSLNPWQRA AAAACNASSL VEEAVEKSIA LESQDNWEST  60
NGSKSPSHKD ENGNKESPQV TISPQESAGD YSEKSQELVH VGVTGPPHPQ PVSHTVGWAS  120
SNPYQDPYYA GMMGAYPMAY VPYGGMPHSR MPLPPEVAQE PVYVNAKQYQ AILRRRQARA  180
KAELEMKLIK SRKPYLHESR HQHAMRRPRG TGGRFAKKTN TEASKPKPGE KNNATQSPTS  240
SHSDQPEAWN DECRKQSEEM QSSASKRREE AEDCSGQQWN SISSNHTSQA RLAIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19159215258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.206110.0bud| flower| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145530.10.0PREDICTED: nuclear transcription factor Y subunit A-9 isoform X1
RefseqXP_013749307.10.0nuclear transcription factor Y subunit A-9-like isoform X1
SwissprotQ945M91e-135NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLM4ER190.0M4ER19_BRARP; Uncharacterized protein
STRINGBra031242.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-137nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]