PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145559.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 183aa    MW: 20697.4 Da    PI: 5.0089
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.8e-1412811589
                    -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3 15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                    + ++p  f+++h++ k+++kt +l++  s + Wev        ++++lt+GWk+F  a++L+ gD+v+Fk++g+  
  XP_009145559.1 12 LQTIPLGFFSKHKEGKTNQKTWKLRSdASDQNWEVIQ------EGMTLTGGWKDFTTAHDLQIGDVVLFKHEGEIV 81
                    458*********77788999****997888*****99......6678***********************776433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.011190IPR003340B3 DNA binding domain
CDDcd100173.91E-11687No hitNo description
SMARTSM010195.6E-91190IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-151396IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-91478IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-162997IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.795130183IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-5130178IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MYFLFDYLCL FLQTIPLGFF SKHKEGKTNQ KTWKLRSDAS DQNWEVIQEG MTLTGGWKDF  60
TTAHDLQIGD VVLFKHEGEI VFHVTPFGPS CCEIQYTHPH IIKEEADAGD ADDNEIRGTW  120
AMSSFSFDYC FLAEVTASNL KADKLYLPKG ATSSTALNKQ CQEMILVNKE GNSWTVTLLL  180
THG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894641e-166AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145559.11e-136PREDICTED: B3 domain-containing protein REM7-like
TrEMBLM4DXM41e-106M4DXM4_BRARP; Uncharacterized protein
STRINGBra021270.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.14e-42B3 family protein