PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145606.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 461aa    MW: 50169.5 Da    PI: 6.7237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.6e-053523901154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ ++++ L++l+ +      +K   a++L +A+eYIk L
  XP_009145606.1 352 VRKEKMGDRIAALQQLVSPF-----GKTAEASVLSEAIEYIKFL 390
                     5778999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.1341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-10351405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.63E-6351395No hitNo description
Gene3DG3DSA:4.10.280.101.9E-9355399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSNESGGSAV FHDKLHHQDH HSLATDHHLQ  60
MIGLGLSSQS PVDQWNQSLL RGDSKAETSF GVMLQENLNL DATSNANANT TSSTTSYQLQ  120
ESDSSHHQAL WRDPHINNND FKPQLNMTSS NRGFFSDHPQ FSPHGSSSTD SSTVTCQGFS  180
IDNSTNTMYG TSTTPNSSSA MFHQHQGAGY NLPGSSDQQP SRNHQQSNLG YSQFGSSTGN  240
YDQIATALPS TWFLRSSPPK PHSPLRFSNN ATFWNPAATA GNVGPTQHDA SSNFFPAIQP  300
PQLHRPSFEE QPKSVSEIRD SSSSDVKRGG GDQPAAKRAK SEAASPSPAF KVRKEKMGDR  360
IAALQQLVSP FGKTAEASVL SEAIEYIKFL HQQVSALSNP YMKSGASLQH QQSDHPKELD  420
VSEEPDLRSR GLCLVPVSST FPVTHDTTVD FWTPTFGGTF R
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145606.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145606.10.0PREDICTED: transcription factor bHLH123 isoform X2
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLM4F3W10.0M4F3W1_BRARP; Uncharacterized protein
STRINGBra035761.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]