PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145673.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 200aa    MW: 22653 Da    PI: 10.5229
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C+ksF +   L  H+++H
  XP_009145673.1  4 HKCKLCSKSFCNGRALGGHMKSH 26
                    79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.598426IPR007087Zinc finger, C2H2
PfamPF139126.2E-6426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MQKHKCKLCS KSFCNGRALG GHMKSHLVSS HRPTRKKLSD SVYSSSSSSE GKTLVYGLRE  60
NPRKSFRVFS QDPESSIVYN SDTETEPESV DPVRKRSRTA VSKNKKKKKK KKRSKKMTRY  120
ISSPEPASSV SDGSQEHDLA MCLMMLSRDS RKIELVKKPV LEAEETKPEK RQFPELRRCV  180
IDLNLPPPQE NDVVTVVSAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193112RKRSRTAVSKNKKKKKKKKR
2106112KKKKKKR
3106115KKKKKKRSKK
4107115KKKKKRSKK
5108115KKKKRSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145673.11e-144PREDICTED: zinc finger protein ZAT9-like isoform X1
RefseqXP_009145681.11e-144PREDICTED: zinc finger protein ZAT9-like isoform X2
TrEMBLA0A3P5ZGV31e-142A0A3P5ZGV3_BRACM; Uncharacterized protein
STRINGBra038491.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95101421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.15e-84C2H2-like zinc finger protein