PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146049.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 850aa    MW: 96758.3 Da    PI: 7.0359
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.33.6e-50301472118
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     l+e ++rwl+++ei+a+L n + +++  ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg  e +++yYah+e+n+tf 
  XP_009146049.1  30 LEEaRSRWLRPNEIHAVLSNPKYFTINVKPVNLPTSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGDEERIHVYYAHGEDNTTFV 124
                     55669****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylevk 118
                     rrcywlL++++e+ivlvhy++++
  XP_009146049.1 125 RRCYWLLDKARENIVLVHYRDTQ 147
                     ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.16226152IPR005559CG-1 DNA-binding domain
SMARTSM010762.0E-7829147IPR005559CG-1 DNA-binding domain
PfamPF038596.8E-4432145IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.0E-4310396IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.54E-14311397IPR014756Immunoglobulin E-set
PfamPF127963.4E-7499577IPR020683Ankyrin repeat-containing domain
CDDcd002041.11E-15505607No hitNo description
SuperFamilySSF484034.82E-17506611IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-17506610IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.963515610IPR020683Ankyrin repeat-containing domain
SMARTSM002483.4E-6548577IPR002110Ankyrin repeat
PROSITE profilePS5008811.728548580IPR002110Ankyrin repeat
SuperFamilySSF525406.37E-5689763IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.21697713IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.144697721IPR000048IQ motif, EF-hand binding site
SMARTSM0001585712734IPR000048IQ motif, EF-hand binding site
SMARTSM000150.024735757IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.255736760IPR000048IQ motif, EF-hand binding site
PfamPF006120.014737757IPR000048IQ motif, EF-hand binding site
SMARTSM0001513809831IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.224810839IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MDGDGSSGRL IGSEIHGFHT LQDLDVQTML EEARSRWLRP NEIHAVLSNP KYFTINVKPV  60
NLPTSGRIIL FDRKMLRNFR KDGHNWKKKK DGRTVKEAHE HLKVGDEERI HVYYAHGEDN  120
TTFVRRCYWL LDKARENIVL VHYRDTQEAA TTSGDSNSHS SSNLVAVEDI DFNPDDSLYL  180
GINNTPVVKT HETRLHDINT LDWDELLVQS DLDNQSAPIV DDMSYFTEHL QNATKDTAEH  240
LTVADESLDA LLNNGPQSRE NFGRWMNSFI GDPNGSLEDP SFEAMVTLDQ NPLAPQATFH  300
PHSDLPQQVF NITEVSPAWA YSSEKTKIVV TGILHNSYQH LGSSNLFCIC GDSCVPAEYV  360
QAGVYRCFIP PHSPGMANLY LSADGHEPIS QCFTFEHRPA PVSAKPVHEN DQESKWEEFE  420
LQVRLAHLLF TSSNKLNVLS SNISPENFLD AKKLSNKTSH LLNSWAYLIK SVQGSKVSFD  480
QAKDQIFELT LKNRIKEWLM EKVLEGRNAR DYDSKGLGVI HLCAILGYTW SIQLFSLSGL  540
SLDFRDKQGW TALHWAAYYG REKMVAALLT AGAKPNLVTD SRKDNLGGCT PADLAQQNGF  600
DGIAAYLAEK CLVAQFVAMK LAGNISGTLE TCKGEMSNQG PLPDDEQNLK DALAAYRTAA  660
EAAARIQGAF REKALKAARS KVIQFENKEE EAKSIIAAMK IQNAFRKYDT RRKIEAAYRI  720
QCRFQTWKMR REFLNMRRQA IRIQAAFRGL QARKQYRKIL WSVGVLEKAI IRWRQKRKLF  780
IGLQVSEAEA EEKAEEDFYK ASQKQAEERL ERSVVRVQAM FRSKKAQEDY RRMKLTHEET  840
QLEYEFLHDV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, sepals, petals, stamen filaments, top of carpels, anthers and siliques, but not in stigmas. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146049.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146049.10.0PREDICTED: calmodulin-binding transcription activator 6
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLM4E0910.0M4E091_BRARP; Uncharacterized protein
STRINGBra022188.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]