PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146146.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 372aa    MW: 39934.4 Da    PI: 8.3921
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13130174347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
   XP_009146146.1 130 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 174
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.673123179IPR017930Myb domain
SuperFamilySSF466891.12E-16125178IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-18126177IPR006447Myb domain, plants
SMARTSM007171.7E-10127177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-11129173IPR009057Homeodomain-like
PfamPF002494.6E-11130174IPR001005SANT/Myb domain
CDDcd001673.07E-9130175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MTRRCSHCSY NGHNSRTCPT RGGGGGTCGG NGGGSSASSS SSSAVKLFGV RLTDGSIIKK  60
SASMGNLSAL AVHHRLSPSS PLATGNHNDS PLTDHGRYSS QDNGGYLSDD PGHGSGSIHH  120
RRVERKRGVP WTEEEHRLFL VGLQKLGKGD WRGISRNYVT SRTPTQVASH AQKYFIRHTC  180
SSRRKRRSSL FDMVTDEMVT DPSPTQEDQT LSKEPESKTF LPSLELKLNN ATESEAAPPQ  240
EQPEEAVEPP NGLSPMLVPG SFFPPCFPVT YTIWLPATST SLQGTEPSLE VSASFQQHQV  300
LKPKPGFAKE RSNMDELVGM SQLSIGMETS HETETPMSLK LIGEPSRPSA FHSNGSVSGS  360
GLSKGSSAIQ AT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.229160.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146146.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146146.10.0PREDICTED: transcription factor MYB1R1
TrEMBLM4EEF80.0M4EEF8_BRARP; Uncharacterized protein
STRINGBra027170.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-168MYB_related family protein