PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146480.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 255aa    MW: 28620.4 Da    PI: 8.9929
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-163279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd++lv  +k+ G g+W++ +++ g+ R++k+c++rw +yl
   XP_009146480.1 32 RGPWTVEEDKILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 79
                     89******************************99************97 PP
2Myb_DNA-binding445.2e-1490130648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++ G++ W++Ia +++ gRt++++k++w+++l
   XP_009146480.1  90 PDEEDLILRLHRLIGNK-WSLIAGRIP-GRTDNEIKNYWNTHL 130
                      79***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-212381IPR009057Homeodomain-like
PROSITE profilePS5129415.6412779IPR017930Myb domain
SuperFamilySSF466891.13E-2828126IPR009057Homeodomain-like
SMARTSM007174.6E-133181IPR001005SANT/Myb domain
PfamPF002498.6E-153279IPR001005SANT/Myb domain
CDDcd001672.52E-113479No hitNo description
PROSITE profilePS5129422.64880134IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2482134IPR009057Homeodomain-like
SMARTSM007172.3E-1284132IPR001005SANT/Myb domain
PfamPF002495.8E-1390130IPR001005SANT/Myb domain
CDDcd001672.23E-1090130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MLKTVDMTSS NGKRSVAKKM TTPCCTKMGM KRGPWTVEED KILVSFIKKE GEGRWRSLPK  60
RAGLLRCGKS CRLRWMNYLR PSVKRGGIAP DEEDLILRLH RLIGNKWSLI AGRIPGRTDN  120
EIKNYWNTHL RKKLLSQGID PQTHKPLDAN NTHKPREEVS GGQNLLEPNS SSHTDDTTVS  180
RGSGAGKISV SVFGDEDFGF CYDDKFSSFL NSVINDDPFD SNIPIISHPL QTHDFIDEIV  240
GTSSSLGHDQ RPEDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25321347108B-MYB
1h8a_C6e-253013425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195871e-146AY519587.1 Arabidopsis thaliana MYB transcription factor (At3g13540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146480.10.0PREDICTED: transcription repressor MYB5
SwissprotQ388501e-138MYB5_ARATH; Transcription repressor MYB5
TrEMBLM4EF610.0M4EF61_BRARP; Uncharacterized protein
STRINGBra027423.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-140myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]