PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146515.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 227aa    MW: 25885.2 Da    PI: 5.3471
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146515.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.6e-22114208499
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++++lk++ l lp   +++  ++k++ ++++l +++g+sW+v l+++ ++g+y++++GW++F+ +n+ + gD +vF l+++ ++++++ v++
  XP_009146515.1 114 AEVTASNLKEDKLHLPVGATSSTALNKQC-QEMILVNKEGNSWTVSLQFSESGGMYYIGRGWRKFCLDNRCDIGDLFVFNLIEDGKTTPLMCVCS 207
                     678999**************999999877.5*****************************************************9999*****98 PP

                     S CS
              B3  99 k 99 
                     +
  XP_009146515.1 208 E 208
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.08163IPR003340B3 DNA binding domain
SMARTSM010190.52263IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-121070IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-101169IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-18110201IPR015300DNA-binding pseudobarrel domain
CDDcd100176.66E-16111197No hitNo description
PROSITE profilePS5086313.606111209IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-18111200IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.4E-20112209IPR003340B3 DNA binding domain
PfamPF023624.9E-21114208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MNQKIWKLRS DTSDKTWEVI QEGRRLTGGW KDFTTAHDLR IVDIFILKDE GDMVFHVTPF  60
GPSCCDIQYT HPHIIKEEAD ADDAADDADD NEHHHKIRGT WAMSSFSFDY CFLAEVTASN  120
LKEDKLHLPV GATSSTALNK QCQEMILVNK EGNSWTVSLQ FSESGGMYYI GRGWRKFCLD  180
NRCDIGDLFV FNLIEDGKTT PLMCVCSESK ECSELLSKHL SRKKKEC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146515.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894641e-115AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013704382.11e-155B3 domain-containing protein REM9-like
TrEMBLM4EEZ81e-169M4EEZ8_BRARP; Uncharacterized protein
STRINGBra027360.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-46B3 family protein