PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146752.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 261aa    MW: 29081.7 Da    PI: 6.3181
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146752.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.32.3e-1425107286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++ + +Liea  ++  +l+rg+l++++W+ev++++       g  ++ +qCk++++ l+k+yk +k+  +       s++ +fd+l+
  XP_009146752.1  25 WSEDATATLIEAWGDRYVHLSRGNLRQNDWKEVADAVnsrhGNNGRPKTDVQCKNRIDTLKKKYKTEKAKPSP------SSWCFFDKLD 107
                     *************************************9776677788999*****************998886......4699999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2623108No hitNo description
SMARTSM005950.001432114IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDTTPETQSK SGGSSRLPPG REDWWSEDAT ATLIEAWGDR YVHLSRGNLR QNDWKEVADA  60
VNSRHGNNGR PKTDVQCKNR IDTLKKKYKT EKAKPSPSSW CFFDKLDFLI GPVALKKSTA  120
AGPAGVFKSP STKAGLKLNQ AGSISSGSSL DDDDDDDDDD VEGDWGFVAR KHRRVEDEDL  180
CPDPGEGSSC RELARAILKL GEVYERIESA KQGMMIELEK QRMEAAKEIE LQRMNMLMDM  240
QMELEKSKLG KRRAAASGKK L
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.26450.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146752.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892539e-74AC189253.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019N06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146752.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A397ZGB40.0A0A397ZGB4_BRACM; Uncharacterized protein
TrEMBLM4F1C00.0M4F1C0_BRARP; Uncharacterized protein
STRINGBra034866.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-114sequence-specific DNA binding transcription factors