PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146782.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 314aa    MW: 35367.2 Da    PI: 5.173
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146782.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-1879129155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++GVr++  +g+WvAeIr+p   + +  r +lg+f taeeAa a+++a+ +++g
  XP_009146782.1  79 SSFRGVRQRV-WGKWVAEIREP---N-KvSRLWLGTFPTAEEAASAYDEAAMAMYG 129
                     679*****99.**********8...2.47***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-2179138IPR016177DNA-binding domain
CDDcd000186.98E-3279139No hitNo description
PROSITE profilePS5103222.23480137IPR001471AP2/ERF domain
PfamPF008477.7E-1380129IPR001471AP2/ERF domain
SMARTSM003802.6E-3780143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3180138IPR001471AP2/ERF domain
PRINTSPR003676.1E-108192IPR001471AP2/ERF domain
PRINTSPR003676.1E-10103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAVYDQTGTH TVSISRKRKS RARADGTTVA DRLKKWKEYN DSVNASSIKQ GEKPKRKPPA  60
KGSKKGCMKG KGGPENSHSS FRGVRQRVWG KWVAEIREPN KVSRLWLGTF PTAEEAASAY  120
DEAAMAMYGP LARLNFPQQC VGSESLTSTS SQSEVCRDEN KAVLDVKQED VDCKTRPVSE  180
IKYVKEVCGD HAYTRLNEFD EEYWSRLSNG VEKPKEEEVI QPQQELDMLT VADYGWLSDM  240
QNEQGFWDPD DSFDIDELLR DIDVGLLTGH DPSQNQSQVV HPGGYDSHPL QMEPQDNNHE  300
LFNLSSLDGS LTKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1769139374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11419SRKRKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed preferentially in roots and stems, and at a lower level in leaves. {ECO:0000269|PubMed:10809011}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146782.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146782.10.0PREDICTED: dehydration-responsive element-binding protein 2B
RefseqXP_009146783.10.0PREDICTED: dehydration-responsive element-binding protein 2B
SwissprotO821333e-99DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLM4EM690.0M4EM69_BRARP; Uncharacterized protein
STRINGBra029889.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.18e-74DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  5. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]