PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146821.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 164aa    MW: 19223.4 Da    PI: 5.8064
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-1289133347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+  ++++  ++G g+Wk+++r+  k+R++ q+ s+ qky
   XP_009146821.1  89 PWTAKEHGEFLKGLGEFGRGDWKSVSRKYVKTRSARQVASHAQKY 133
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-879137IPR009057Homeodomain-like
PROSITE profilePS5129415.57182138IPR017930Myb domain
SuperFamilySSF466891.35E-1384137IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-1385137IPR006447Myb domain, plants
SMARTSM007174.0E-786136IPR001005SANT/Myb domain
CDDcd001676.22E-689134No hitNo description
PfamPF002495.4E-989133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MMAWWEQWGR DEDKMFEEAL VLTENVPNRF ETIASYLEMP LEVVKHHYDA LVHDVELIES  60
GPIDYQDHPD GILSPETKHV EKDKKRGRPW TAKEHGEFLK GLGEFGRGDW KSVSRKYVKT  120
RSARQVASHA QKYFQRQDME NHAKKRSSIH DMTLVDDNDA DVNE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.263100.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146821.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146821.11e-120PREDICTED: transcription factor DIVARICATA-like
TrEMBLM4EM361e-107M4EM36_BRARP; Uncharacterized protein
STRINGBra029856.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17289711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-46MYB family protein