PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146834.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 455aa    MW: 51180.3 Da    PI: 5.8445
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.3e-52301571128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv++yLk+kv gk++++ ++i +vdiyk+ePwdL   +++k++++ewyf+s  dkky +g r nrat++gyWkatgkd+e+ 
  XP_009146834.1  30 LAPGFRFHPTDEELVSYYLKRKVMGKPVRF-DAIGDVDIYKHEPWDLAvfSRLKTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGKDREIR 123
                     579************************999.99**************8544899999************************************** PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + + +l g+kktLvf++grap+g +t+Wvmheyrl
  XP_009146834.1 124 R-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 157
                     9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5923182IPR003441NAC domain
PROSITE profilePS5100557.24430181IPR003441NAC domain
PfamPF023658.6E-2732157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGRESVAVVS SPPTATATAR GTATVAATSL APGFRFHPTD EELVSYYLKR KVMGKPVRFD  60
AIGDVDIYKH EPWDLAVFSR LKTRDQEWYF YSALDKKYGN GARMNRATNK GYWKATGKDR  120
EIRRDIQLLG MKKTLVFHSG RAPDGLRTNW VMHEYRLVDY ETESNGNLVQ DAYVLCRVFH  180
KNNIGPPSGN RYAPFLEEEW ADEGVALIPG VDVRVRAEPL PVANGNNQMD QEIQSASKDL  240
ININEPPRET TPMDIEVNHQ NHHENAPKPQ ENNNNNHYDE AEEALKLEQA EEDERPPPAC  300
VLNKEAPLPL LQYKRRRQNE PNNSSRTTQD HCSSTITTVD NTTPTLISSS AAAATNTAIS  360
ALLEFSLMGI SAKKENTPQP PNKEAYPPAP LPSTEEKLND LQKEVHQMSV ERETFKLEMM  420
SAEAMISILQ SRIDALRQEN DELRKNNATK GQAVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-472218312170NAC domain-containing protein 19
3swm_B7e-472218312170NAC domain-containing protein 19
3swm_C7e-472218312170NAC domain-containing protein 19
3swm_D7e-472218312170NAC domain-containing protein 19
3swp_A7e-472218312170NAC domain-containing protein 19
3swp_B7e-472218312170NAC domain-containing protein 19
3swp_C7e-472218312170NAC domain-containing protein 19
3swp_D7e-472218312170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.122840.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146834.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146834.10.0PREDICTED: NAC domain-containing protein 13-like isoform X1
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLM4EM240.0M4EM24_BRARP; Uncharacterized protein
STRINGBra029844.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.10.0NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]