PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146836.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 388aa    MW: 41952.4 Da    PI: 7.6782
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046174196123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_009146836.1 174 YQCKTCDRTFPSFQALGGHRASH 196
                     9***********99999998887 PP
2zf-C2H2130.00031253275123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_009146836.1 253 HECGICGAEFTSGQALGGHMRRH 275
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.66E-8173196No hitNo description
PfamPF139122.3E-12173198IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471174201IPR007087Zinc finger, C2H2
SMARTSM003550.028174196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-8248275No hitNo description
Gene3DG3DSA:3.30.160.608.0E-4251277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-11252277IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93253277IPR007087Zinc finger, C2H2
SMARTSM003550.047253275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
METAEEAISA AKEQALILKG KRTKRQRLQS PIPFSIVPPM SSQEPDVEEE STSLVSKEKS  60
LNDDINTNKN DNNVLINGVT SPASSSSNNN ATLKTAADEE DQDMANCLIL LAQGHYTPPF  120
PPQQQPQQTR QFMMSYQESG NNNNNAYRSS SRRFLETSSP NGTTSGGRAG YYVYQCKTCD  180
RTFPSFQALG GHRASHKKPK AAAGLHSDHD LKKSIYNDAV SLHLNNVPTA TPNNNSSHRS  240
LVVYGKAGNN KVHECGICGA EFTSGQALGG HMRRHRGAVV ASAASASTAT VRVAATAGTA  300
NTALSLSPMS FDHMSVHPVQ GPVKRARSAV VSLDLDLNLP APEDVNRVNG LSFASKQEQE  360
HEHEQTQQRE EQKSIVLSSA PTLVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146836.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640212.10.0zinc finger protein ZAT5-like
RefseqXP_018514567.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A397ZEM10.0A0A397ZEM1_BRACM; Uncharacterized protein
STRINGBo5g137370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-154C2H2 family protein