PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146906.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family S1Fa-like
Protein Properties Length: 73aa    MW: 8054.75 Da    PI: 10.7779
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA144.12.5e-45573270
            S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                    + +k+e+kGlnPGlivllv+ggll++flvgn+ily+yaqknlPPrkkkPvskkk+k+eklkqGv+vPGe
  XP_009146906.1  5 FSGKIESKGLNPGLIVLLVIGGLLVTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKLKQGVQVPGE 73
                    5689****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046896.4E-40973IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MADEFSGKIE SKGLNPGLIV LLVIGGLLVT FLVGNFILYT YAQKNLPPRK KKPVSKKKMK  60
KEKLKQGVQV PGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146906.13e-44PREDICTED: DNA-binding protein S1FA3
RefseqXP_022575570.13e-44DNA-binding protein S1FA3
SwissprotQ423371e-18S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A078I1J27e-43A0A078I1J2_BRANA; BnaA05g28810D protein
TrEMBLA0A397ZID17e-43A0A397ZID1_BRACM; Uncharacterized protein
TrEMBLA0A3P6FBX67e-43A0A3P6FBX6_BRAOL; Uncharacterized protein
TrEMBLM4ELW47e-43M4ELW4_BRARP; Uncharacterized protein
STRINGBra029784.1-P1e-43(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09735.12e-09S1FA-like DNA-binding protein