PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009147067.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 210aa MW: 24111.6 Da PI: 9.9767

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009147067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.7	5.4e-30	40	128	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF +r+++ +ks r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka ++vkk+k+gkw vtk+++eHnH+l XP_009147067.1 40 SFYDSYATRTGFVMRVDAFRKSMRDGTVVWRRLVCNKEGFRRSKPRR-SESRKPRAITREGCKALIVVKKDKSGKWIVTKFVKEHNHPLL 128 5*****************************************999.9*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-28	40	128	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MEGNLLRGED VVENTITEEA SSVVEPFIGM EFESEEATKS FYDSYATRTG FVMRVDAFRK 60 SMRDGTVVWR RLVCNKEGFR RSKPRRSESR KPRAITREGC KALIVVKKDK SGKWIVTKFV 120 KEHNHPLLSL LANARRSSHI SQSPDEKDAK IRELSTELSR ERKRCATLQQ QLDMVLNVME 180 EHANHLSVNI NNVIQSVKEI ESITFTKPLS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009147067.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009147067.1	1e-155	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	3e-29	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A397ZFM9	1e-147	A0A397ZFM9_BRACM; Uncharacterized protein
STRING	Bo5g141470.1	1e-128	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-102	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]