PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009147247.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 1065aa MW: 119466 Da PI: 9.7128

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009147247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.4e-07	45	77	3	36
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 WT+ E e+++d+ +++G + W+++a+ + + R+ XP_009147247.1 45 QWTKAELERFYDYYRKYGQD-WRKVAAAIRNSRS 77 6***************99.***99886666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.09E-7	44	92	IPR009057	Homeodomain-like
CDD	cd00167	0.00682	46	89	No hit	No description
Pfam	PF06584	1.1E-31	650	750	IPR033471	DIRP domain
SMART	SM01135	2.6E-61	650	751	IPR033471	DIRP domain
SMART	SM00333	0.004	737	794	IPR002999	Tudor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1065 aa Download sequence Send to blast
MAPAVRKSRS VNKRFTNEPS PRKDAGSSRK NKQRKTKFSD KLGPQWTKAE LERFYDYYRK 60 YGQDWRKVAA AIRNSRSVDM VEALFNMNKA YLSLPEGTAS VAGLIAMMTD HYTVMEGSGS 120 EGEGHDVPEA PRKQQKRKRP KPQLSDSREE DDTQHPVAST DGCLKFLKQA RANGTHRRAT 180 GKRTPRVPVQ TSRDDGEGAT PRNKRARKQL DANDDVAAHF LGLTLTDASR REGSPQVSES 240 PNKRTEPSDN SPIKSWGKMV NSRALETLKQ LSFYLFIYXK KHFSTLSFDQ SRTRKASREK 300 KLESDREDVE GVGEMEAPRK VKRVYKKRVK VEEAECNDSD DNGGACSATE GSRIKSKRRK 360 AGVGASRGTY SPRSPKEKDN KFTSGDEFDA LQALADLSAS LLPGALMESE SSAQLKEERI 420 ENDMDEKSSS PDDSHGEKAD SEPDDSLLHA ISAIGNVAYS RKPKSSRQLS TDCNAVPTEK 480 PEPEPTSGSS KRKRKPKKLW DETPHESTRK KSTNKQELAQ EDVNMKSSLR TKRSGQVLPP 540 QSKQLKVAKE LEEATTTSDK KRSAMDVVEV ATTKEVSDSG PASLPQKPPN RRKMSLKKSL 600 QERDNKSSET IHKASRSSRS LSEHELLLKD KLSTSLSHPL ARRRCMFEWF YSAIDHPWFA 660 KMEFVDYLNH VGLGHIPRLT RLEWSVIKSS LGRPRRFSER FLQEEREKLK HYRESVRKHY 720 TELRTGAREG LPTDLARPLA VGNRVIAIHP KTREIHDGKI LTVDHSQCNV LFDDVGVELV 780 KDIDCMPLNP LEYMPEGLRR QVDKCLSIKK EAQLSGVSVI FPPCGLENID FSMNQSLNQG 840 DMIAPILHGK VLTNTSSSPH QTNQSHIINY SKGREAEIQR VLALQHALDE KEMEPEMVEI 900 VKGSKTRAQA MVDAAIKAAS SVKEGEDAIK MIQEALDMVG KHQPLRSSVV KHEEHANGGV 960 EHHQNPSLSS DASKPMANND FISQDGSSEK NEVQMPAELI TSCVASWLMI QMCTERQYPP 1020 AEVAQLIDTA VTSLQPRCPQ NLPIYREIQM CMGRIKTQIL SLVPS

Sequence ? help Back to Top

Protein Sequence Length: 1065 aa Download sequence Send to blast

MAPAVRKSRS VNKRFTNEPS PRKDAGSSRK NKQRKTKFSD KLGPQWTKAE LERFYDYYRK  60
YGQDWRKVAA AIRNSRSVDM VEALFNMNKA YLSLPEGTAS VAGLIAMMTD HYTVMEGSGS  120
EGEGHDVPEA PRKQQKRKRP KPQLSDSREE DDTQHPVAST DGCLKFLKQA RANGTHRRAT  180
GKRTPRVPVQ TSRDDGEGAT PRNKRARKQL DANDDVAAHF LGLTLTDASR REGSPQVSES  240
PNKRTEPSDN SPIKSWGKMV NSRALETLKQ LSFYLFIYXK KHFSTLSFDQ SRTRKASREK  300
KLESDREDVE GVGEMEAPRK VKRVYKKRVK VEEAECNDSD DNGGACSATE GSRIKSKRRK  360
AGVGASRGTY SPRSPKEKDN KFTSGDEFDA LQALADLSAS LLPGALMESE SSAQLKEERI  420
ENDMDEKSSS PDDSHGEKAD SEPDDSLLHA ISAIGNVAYS RKPKSSRQLS TDCNAVPTEK  480
PEPEPTSGSS KRKRKPKKLW DETPHESTRK KSTNKQELAQ EDVNMKSSLR TKRSGQVLPP  540
QSKQLKVAKE LEEATTTSDK KRSAMDVVEV ATTKEVSDSG PASLPQKPPN RRKMSLKKSL  600
QERDNKSSET IHKASRSSRS LSEHELLLKD KLSTSLSHPL ARRRCMFEWF YSAIDHPWFA  660
KMEFVDYLNH VGLGHIPRLT RLEWSVIKSS LGRPRRFSER FLQEEREKLK HYRESVRKHY  720
TELRTGAREG LPTDLARPLA VGNRVIAIHP KTREIHDGKI LTVDHSQCNV LFDDVGVELV  780
KDIDCMPLNP LEYMPEGLRR QVDKCLSIKK EAQLSGVSVI FPPCGLENID FSMNQSLNQG  840
DMIAPILHGK VLTNTSSSPH QTNQSHIINY SKGREAEIQR VLALQHALDE KEMEPEMVEI  900
VKGSKTRAQA MVDAAIKAAS SVKEGEDAIK MIQEALDMVG KHQPLRSSVV KHEEHANGGV  960
EHHQNPSLSS DASKPMANND FISQDGSSEK NEVQMPAELI TSCVASWLMI QMCTERQYPP  1020
AEVAQLIDTA VTSLQPRCPQ NLPIYREIQM CMGRIKTQIL SLVPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	141	QKRKRPKP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009147247.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018514552.1	0.0	PREDICTED: protein ALWAYS EARLY 2
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A3P5ZGA0	0.0	A0A3P5ZGA0_BRACM; Uncharacterized protein
STRING	Bra039443.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	4e-79	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]