PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147290.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 394aa    MW: 45119.2 Da    PI: 7.437
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147290.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-10345393248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      + WT+eE   l ++vk++G+  Wk I +  +     Rt+ ++k++w+++l
   XP_009147290.1 345 KFWTPEEVAVLREGVKEYGKS-WKEIKNANPevlAERTEVDLKDKWRNLL 393
                      67*****************88.************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.968339394IPR017930Myb domain
SuperFamilySSF466894.68E-13340394IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-13340394IPR009057Homeodomain-like
SMARTSM007171.2E-4343394IPR001005SANT/Myb domain
CDDcd116605.19E-15345394No hitNo description
PfamPF002494.2E-8347393IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MKVMDKWVAE FFIRCQKNPR VSPTNLLSAL KFRESAGDCS YLKKSSVLRE ISDSLIRGNV  60
AEGTLDLLET LEKLHRGSVL TESHKFAYCW TAVECTVRLM WPLSASEGLY GDAVERIWTK  120
RIGVLKERGS GLVSEELLKW EADLRKAVED DEVYKRIRES NVRYTAVCFL NQLLKEQWAV  180
LGSCSLESVA QRMLLKSRKA VDKGTRRLDE GEKENGEDNR DVHGVECPQH AAEEEEERTM  240
GVQEQEHEPS LDEGDKMVAR ELKDFLLEIQ RQMDPSSTRQ LQEPNNANIT PPQPSRSVNR  300
TGTSGQQQDS ASENRVRPHL PTPEPLNVSP LKKKRANPAP RRIKKFWTPE EVAVLREGVK  360
EYGKSWKEIK NANPEVLAER TEVDLKDKWR NLLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankS849682e-88S84968.1 Bcg4-4=acyl carrier protein [Brassica rapa, Genomic, 3898 nt].
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147290.10.0PREDICTED: nuclear receptor corepressor 1-like isoform X1
TrEMBLM4FEE90.0M4FEE9_BRARP; Uncharacterized protein
STRINGBra039470.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-152MYB_related family protein